Job Description P24242 Confidence 100.00% Date Wed Jan 25 15:20:45 GMT 2012 Rank 30 Aligned Residues 265 % Identity 22% Template c3ctpB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose Resolution 1.41 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I	D
Query Conservation
Alig confidence										.	.																																																														.	.	.	.	.
Template Conservation										.	.																																																														.	.	.	.	.
Template Sequence		S	K	T	I	G	L	M	V	.	.	P	N	I	S	N	P	F	F	N	Q	M	A	S	V	I	E	E	Y	A	K	N	K	G	Y	T	L	F	L	C	N	T	D	D	D	K	E	K	E	K	T	Y	L	E	V	L	Q	S	H	R	V	A	G	I	I	A	S	R	S	Q	C	E	.	.	.	.	.	D	E	Y	A
Template Known Secondary structure										.	.	S		T	T	S																	T	T									T	T															T	T		S						S				S	.	.	.	.	.	G	G	G	T
Template Predicted Secondary structure										.	.																																																														.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	S	Q	P	I	M	V	L	N	R	R	L	R	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E	K	L	I	A
Query Conservation
Alig confidence																.																																																											.	.
Template Conservation																.																																																											.	.
Template Sequence		N	I	D	I	P	V	V	A	F	E	N	H	I	L	.	D	N	I	I	T	I	S	S	D	N	Y	N	G	G	R	M	A	F	D	H	L	Y	E	K	G	C	R	K	I	L	H	I	K	G	P	E	V	F	E	A	T	E	L	R	Y	K	G	F	L	D	G	A	R	A	K	D	L	E	.	.	I	D	F	I	E
Template Known Secondary structure		T			S						S	S				.	T	T	S																					T	T			S								T	T																		T	T			.	.
Template Predicted Secondary structure																.																																																											.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	Y	T	V	P	A	L	S	S	V	K	I	P	V	T	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Q	H	D	F	Q	V	K	M	L	E	E	D	I	N	S	M	K	D	I	V	N	Y	D	G	I	F	V	F	N	D	I	A	A	A	T	V	M	R	A	L	K	K	R	G	V	S	I	P	Q	E	V	Q	I	I	G	F	D	N	S	F	I	G	E	L	L	Y	P	S	L	T	T	I	N	Q	P	I	E	A	L
Template Known Secondary structure			S	S	S			G	G	G	G	G				T	T	G	G	G	G	G	G	S	S					S	S														T	T			T	T	T	T						S	B			T					S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		I	Q	E	I	I	G	R	L	I	F	M	L	D	G	G	D	F	.	S	P	P	K	T	F	S	G	K	L	I	R	R	D	S	L	I	A
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		A	Y	T	I	I	E	L	L	I	K	I	I	N	G	E	G	V	L	I	E	D	Y	I	M	E	V	K	L	I	E	R	E	T	T	I	S
Template Known Secondary structure															T																		S	S	S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions