Job Description P24242 Confidence 99.96% Date Wed Jan 25 15:20:45 GMT 2012 Rank 56 Aligned Residues 268 % Identity 19% Template c2vk2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein Resolution 1.20 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S	.	V	D	E	I	D	D	I	I	D	A
Query Conservation																																																																							.
Alig confidence								.	.																																																														.
Template Conservation								.	.
Template Sequence		T	V	G	F	S	Q	.	.	V	G	S	E	S	G	W	R	A	A	E	T	N	V	A	K	S	E	A	E	K	R	G	I	T	L	K	I	A	D	G	Q	Q	K	Q	E	N	Q	I	K	A	V	R	S	F	V	A	Q	G	V	D	A	I	F	I	A	P	V	V	A	T	G	W	E	P	V	L	K	E	A	K	D
Template Known Secondary structure								.	.					S																		T									T	T																T		S							S	S	S	S	S
Template Predicted Secondary structure								.	.
Template SS confidence
		4	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure										.	.	.	.																																			.	.	.
Query SS confidence										.	.	.	.																																			.	.	.
Query Sequence		H	S	Q	P	I	M	V	L	.	.	.	.	N	R	R	L	R	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	.	.	.	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L
Query Conservation										.	.	.	.																																			.	.	.
Alig confidence										.	.	.	.																																			.	.	.																													.
Template Conservation																																																																															.
Template Sequence		A	E	I	P	V	F	L	L	D	R	S	I	D	V	K	D	K	S	L	Y	M	T	T	V	T	A	D	N	I	L	E	G	K	L	I	G	D	W	L	V	K	E	V	N	G	K	P	C	N	V	V	E	L	Q	G	T	V	G	A	S	V	A	I	D	R	K	K	G	F	A	E	A	I	K	N	A	P	.	N	I
Template Known Secondary structure		T	T							S	S					S		G	G	G	S	S																							T	T	S										S	T	T															T	T	T		T	.	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																																										.	.
Query SS confidence																												.	.	.																																										.	.
Query Sequence		N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	.	.	.	A	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	.	.	I	A	P	Y	T	V	P	A
Query Conservation																												.	.	.																																										.	.
Alig confidence																												.	.	.																																										.	.
Template Conservation
Template Sequence		K	I	I	R	S	Q	S	G	D	F	T	R	S	K	G	K	E	V	M	E	S	F	I	K	A	E	N	N	G	K	N	I	C	M	V	Y	A	H	N	D	D	M	V	I	G	A	I	Q	A	I	K	E	A	G	L	K	P	G	K	D	I	L	T	G	S	I	D	G	V	P	D	I	Y	K	A	M	M	D	G	E
Template Known Secondary structure										T	T																T	T	T	T	T	T							S	S														T	T			B	T	T	T	B																	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		L	S	S	V	K	I	P	V	T	E	M	I	Q	E	I	I	G	R	L	I	F	M	L	.	D	G	G	D	F	S	P	P	K	T	F	S	G	K	L	I	R	R	D	S	L
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		A	N	A	S	V	E	L	T	P	N	M	A	G	P	A	F	D	A	L	E	K	Y	K	K	D	G	T	M	P	E	K	L	T	L	T	K	S	T	L	Y	L	P	D	T	A
Template Known Secondary structure										S																						S											G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions