Job Description P24242 Confidence 99.97% Date Wed Jan 25 15:20:45 GMT 2012 Rank 54 Aligned Residues 268 % Identity 16% Template c2rjoA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans Resolution 2.05 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S	V	.	.	.	D	E	I	D	D
Query Conservation																																																																										.	.	.
Alig confidence										.	.																																																															.	.	.
Template Conservation										.	.
Template Sequence		Q	T	T	L	A	C	S	F	.	.	R	S	L	T	N	P	Y	Y	T	A	F	N	K	G	A	Q	S	F	A	K	S	V	G	L	P	Y	V	P	L	T	T	E	G	S	S	E	K	G	I	A	D	I	R	A	L	L	Q	K	T	G	G	N	L	V	L	N	V	D	P	N	D	S	A	D	A	R	V	I	V	E
Template Known Secondary structure										.	.	S		T	T	S																		T									T	T																T	T	T									S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																							.	.
Query SS confidence																						.	.	.	.	.	.	.	.																							.	.
Query Sequence		I	I	D	A	H	S	Q	P	I	M	V	L	N	R	R	L	R	K	N	S	.	.	.	.	.	.	.	.	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	.	.	G	H	Q	E	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L
Query Conservation																						.	.	.	.	.	.	.	.																							.	.
Alig confidence																						.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		A	C	S	K	A	G	A	Y	V	T	T	I	W	N	K	P	K	D	L	H	P	W	D	Y	N	P	N	Y	V	A	H	L	S	Y	D	G	V	A	Y	G	E	E	T	A	T	Q	L	F	K	S	X	G	G	K	G	G	V	V	A	L	G	G	I	F	S	N	V	P	A	I	E	R	K	A	G	L	D	A	A	L
Template Known Secondary structure							T							S				T	T			G	G	G	G	T	T	T																								T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																															.																																																	.	.
Query SS confidence																															.																																																	.	.
Query Sequence		A	Q	H	G	I	A	L	N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	.	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	.	.
Query Conservation																															.																																																	.	.
Alig confidence						.																									.																															.	.																	.	.
Template Conservation						.																																																								.	.
Template Sequence		K	K	F	P	.	G	I	Q	L	L	D	F	Q	V	A	D	W	N	S	Q	K	A	F	P	I	X	Q	A	W	X	T	R	F	N	S	K	I	K	G	V	W	A	A	N	D	D	X	A	L	G	A	I	E	A	L	R	A	E	G	L	.	.	A	G	Q	I	P	V	T	G	X	D	G	T	Q	P	G	L	V	A
Template Known Secondary structure			T		T	.	T										T	T																	G	G	G							S	S														T	T		.	.	B	T	T	B					S	B
Template Predicted Secondary structure						.																																																								.	.
Template SS confidence
		198	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
			283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.								.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure		.																																			.	.	.	.	.	.	.
Query SS confidence		.																																			.	.	.	.	.	.	.
Query Sequence		.	Y	T	V	P	A	L	S	S	V	K	I	P	V	T	E	M	I	Q	E	I	I	G	R	L	I	F	M	L	D	G	G	D	F	S	.	.	.	.	.	.	.	P	P	K	T	F	S	G	K	L	I	R	R	D	S	L
Query Conservation		.																																			.	.	.	.	.	.	.
Alig confidence		.																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	S	G	E	L	V	A	S	V	D	W	D	P	F	W	L	G	G	I	G	L	S	X	G	L	Q	A	K	E	K	K	I	D	L	A	T	L	P	K	D	R	R	E	S	F	C	T	A	T	F	V	T	K	T	N	V
Template Known Secondary structure				T	T	S			B																						T	T		S		G	G	G	S		G	G	G	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions