Job Description P24242 Confidence 99.84% Date Wed Jan 25 15:20:45 GMT 2012 Rank 67 Aligned Residues 243 % Identity 15% Template c2fqxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		61	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		T	L	G	L	V	V	.	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I	D	A
Query Conservation								.
Alig confidence								.																																					.
Template Conservation																																													.
Template Sequence		V	V	G	M	V	T	D	S	G	D	I	D	D	K	S	F	N	Q	Q	V	W	E	G	I	S	R	F	A	Q	E	N	N	A	K	C	K	Y	V	T	A	S	T	D	.	A	E	Y	V	P	S	L	S	A	F	A	D	E	N	M	G	L	V	V	A	C	G	S	F	L	V	E	A	V	I	E	T	S	A	R	F
Template Known Secondary structure								S	S	S		T	T	S	S	S																T	T										S	G	.	G	G											T	T		S						S	T	T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure															.																	.	.	.	.
Query SS confidence															.																	.	.	.	.
Query Sequence		H	S	Q	P	I	M	V	L	N	R	R	L	R	.	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	.	.	.	.	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E
Query Conservation															.																	.	.	.	.
Alig confidence															.																	.	.	.	.																		.
Template Conservation																																																					.
Template Sequence		P	K	Q	K	F	L	V	I	D	A	V	V	Q	D	R	D	N	V	V	S	A	V	F	G	Q	N	E	G	S	F	L	V	G	V	A	A	A	L	K	A	K	E	A	G	K	S	A	V	G	F	I	.	V	G	M	E	L	G	M	M	P	L	F	E	A	G	F	E	A	G	V	K	A	V	D	P	D	I	Q	V
Template Known Secondary structure		T	T	S						S	S				S		T	T																										T	T								.		S			S	T	T	T																T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.
Predicted Secondary structure										.																																																																		.	.	.	.	.
Query SS confidence										.																																																																		.	.	.	.	.
Query Sequence		K	L	I	A	N	G	K	W	.	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	Y	T	V	P	A	.	.	.	.	.	L
Query Conservation										.																																																																		.	.	.	.	.
Alig confidence										.																.	.																											.																						.	.	.	.	.
Template Conservation																										.	.																											.
Template Sequence		V	V	E	V	A	N	T	F	S	D	P	Q	K	G	Q	A	L	A	A	K	L	Y	D	S	.	.	G	V	N	V	I	F	Q	V	A	G	G	T	G	N	G	V	I	K	E	A	R	D	R	R	L	N	.	G	Q	D	V	W	V	I	G	V	D	R	D	Q	Y	M	D	G	V	Y	D	G	S	K	S	V	V	L
Template Known Secondary structure							S		S	S															T	.	.	T									G	G	G														T	.	T										S			G	G	G	G	B		S	S	S		B	S
Template Predicted Secondary structure																										.	.																											.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	V	K	I	P	V	T	E	M	I	Q	E	I	I	G	R	L	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	M	V	K	R	A	D	V	A	A	E	R	I	S	K	M	A	Y	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions