 |
Job Description | P0A8I5 | Confidence | 31.46% | Date | Thu Jan 5 11:07:56 GMT 2012 |
Rank | 418 | Aligned Residues | 44 |
% Identity | 16% | Template | c3trkA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:nonstructural polyprotein; |
PDBTitle: structure of the chikungunya virus nsp2 protease
|
Resolution | 2.40 Å |
|
  |   |
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 170 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | S | L | R | M | V | Q | L | F | F | P | D | P | W | H | K | A | R | H | N | K | R | R | I | V | Q | V | P | F | A | E | L | V | K | . |
. |
. |
. |
. |
S | K | L | Q | L | G | G | V | F | H | M | A |
Query Conservation |   |
  |
|   |   |   |
|   |   |   |
|
|
|
|
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . | . | . |
|   |
|
|
|
|
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|
|   |   |
|
|   |
| . | . |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|   |   |
|
|
|
|
|   |
|   |
|
|
Template Sequence |   |
G | R | Y | D | L | V | V | I | N | I | H | T | P | F | R | . |
. |
I | H | H | Y | Q | Q | C | V | D | H | A | X | K | L | Q | X | L | G | G | D | S | L | R | L | L | K | P | G | G | S | L | L | I | R |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | G |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1212 | . | . | . | . | . | . | . | 1220 | . | . | . | . | . | . | |
|
. | . | . | 1230 | . | . | . | . | . | . | . | . | . | 1240 | . | . | . | . | . | . | . | . | . | 1250 | . | . | . | . | . | . | . | . | . | 1260 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|