Job Description P0A8I5 Confidence 97.94% Date Thu Jan 5 11:07:56 GMT 2012 Rank 285 Aligned Residues 147 % Identity 13% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.																.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		A	L	F	G	R	E	A	P	V	T	L	E	I	G	F	G	M	G	A	S	L	V	A	M	A	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	E	Q	D	F	L	G	I	E	V	H	S	P	G	V	G	A	C	L	A	S	A	H	E	E	G	L	S	.	N	L	R	V	M	C	H	D
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence		E	M	L	E	P	Y	K	G	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H	A	N	V	K	H	Y	N	A	S	E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L	A	A	M	N	M	V	I	R	G	I	D	F	N	F	G	K	K	N	A	D
Template Known Secondary structure								S						S	S		T	T																			T	S						G	G	G																							T	T				B			S	S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	E	V	L	H	K	M	I	P	D	N	S	L	R	M	V	Q	L	F	F	P	D	P	W	H	K	A	R	H	N	K	R	R	I	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	A	E	L	V	K	S	K	L	Q	L	G	G	V	F	H	M	A	T	D	W	E
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.
Template Sequence		S	F	.	.	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K	D	W	W	H	E	K	L	A	D	D	P	R	W	T	I	N	T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A	W	M	L	H	M	L	Y	H	L	A	P	T	G	S	M	A	L	L	L	A	N	G
Template Known Secondary structure		T	T	.	.	T	S		S		T	T												S	S			S				G	G	G	T	T		G	G	G													T	T		T											T													T
Template Predicted Secondary structure				.	.
Template SS confidence
		318	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		183	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		P	Y	A	.	.	.	.	.	.	E	H	M	L	E	V	M	S	S	I	D	G	Y	K	N	L	S	E	S	N	D
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		S	M	S	S	N	T	N	N	E	G	E	I	R	K	T	L	V	E	Q	D	L	V	E	C	M	V	A	L	P	G
Template Known Secondary structure							G	G	G											T	T										T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions