Job Description P0A8I5 Confidence 98.23% Date Thu Jan 5 11:07:56 GMT 2012 Rank 280 Aligned Residues 149 % Identity 19% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		11	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																					.
Query SS confidence												.	.																					.
Query Sequence		D	E	N	G	R	P	L	R	R	I	.	.	R	S	F	V	R	R	Q	G	R	L	T	K	G	Q	E	H	A	L	E	N	.	Y	W	P	V	M	G	V	E	F	S	E	D	M	L	D	F	P	A	L	F	G	R	E	A	P	V	T	L	E	I	G	F	G	M	G	A	S	L	V	A	M	A	K	D	R	P	E
Query Conservation												.	.																					.
Alig confidence												.	.																					.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	E	G	T	P	V	S	R	D	F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	A	R	F	P	E	H	P	H	P	L	F	.	.	.	.	.	.	.	.	.	.	.	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q
Template Known Secondary structure			T	T						T	T	T	T			S	S		T	T	T													T	T					G	G	G		S	S	S			.	.	.	.	.	.	.	.	.	.	.					S			T	T	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80												.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
														88	.	90	.	.	.	.				.	.	.	.	.	100	.	.												.	.	.	.	.	.	.	110	.	.	.													.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Q	D	F	L	G	I	E	.	.	.	V	H	S	P	G	V	G	A	.	.	.	.	.	.	.	.	.	.	.	C	L	A	S	A	H	E	E	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	N	L	R	V	M	C	H	D	A	V	E	V	L	H	K	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																																																																	.
Template Sequence		F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	.
Template Known Secondary structure							T	T	S	S											S	S												T	T		G	G	G										T				S		S																	S						G	G	G	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		I	P	D	N	S	.	.	.	L	R	M	V	Q	L	F	F	P	D	P	W	H	K	A	R	H	N	K	R	R	I	V	Q	V	P	F	A	E	L	V	K	S	K	L	Q	L	G	G	V	F	H
Query Conservation							.	.	.
Alig confidence							.	.	.																			.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	.	.	.	.	.	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A
Template Known Secondary structure		S		G	G	G	T	T									S	S		T	T	T		G	G	G		.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions