Job Description P16456 Confidence 74.27% Date Thu Jan 5 11:35:11 GMT 2012 Rank 42 Aligned Residues 81 % Identity 17% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		D	P	N	L	L	.	V	G	N	E	T	R	D	D	A	A	V	Y	D	L	G	N	G	T	S	V	I	S	T	T	D	F	F	M	P	I	V	D	N	P	F	D	F	G	R	I	A	A	T	N	A	I	S	D	I	F	A	M	G	G	K	P	I	M	A	I	A	I	L	G	W	P	I	N	K	L	S	P	E	I
Query Conservation							.
Alig confidence							.																		.	.							.	.	.	.	.	.	.	.													.	.	.	.								.	.	.									.
Template Conservation																									.	.							.	.	.	.	.	.	.	.													.	.	.	.								.	.	.									.
Template Sequence		R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	.	.	V	N	L	G	V	S	.	.	.	.	.	.	.	.	A	E	E	R	G	K	V	L	A	E	R	S	.	.	.	.	K	E	X	G	A	K	A	.	.	.	F	I	H	Y	A	S	T	D	.	D	L	K	D	V	N
Template Known Secondary structure			T	T	S					S	S			S									S	S	.	.							.	.	.	.	.	.	.	.													.	.	.	.			T	T		S		.	.	.							T	T	.	G	G	G	S
Template Predicted Secondary structure																									.	.							.	.	.	.	.	.	.	.													.	.	.	.								.	.	.									.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.									.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.				.	.	.	.	.	.	.	190		.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	V	T	E	G	G	R	Y	A	C	R	Q	A	G	I	A	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions