 |
Job Description | P33022 | Confidence | 5.30% | Date | Thu Jan 5 11:50:57 GMT 2012 |
Rank | 76 | Aligned Residues | 68 |
% Identity | 19% | Template | c3llxA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; |
PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution
|
Resolution | 1.50 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | R | K | I | I | L | D | C | D | P | G | . |
. |
. |
. |
. |
. |
H | D | D | A | I | A | I | M | M | A | A | K | H | P | A | I | D | L | L | G | I | T | I | V | A | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | Q | T | L | D | K | T | L | I | N | G | L | N | V | C | Q | K | L | E | I | N | V | P |
Query Conservation |   |
|   |   |
|
|
|
|
|
|   |
| . | . | . | . | . | . |   |
|
|   |   |
|
|   |   |
|
|   |   |   |   |
|   |
|   |
|
|
|   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
Template Sequence |   |
D | F | S | V | F | I | E | I | D | S | D | D | H | R | G | G | I | K | P | S | D | S | K | L | L | T | I | A | K | T | L | G | E | H | F | T | G | L | X | T | H | A | G | G | S | Y | A | C | N | T | E | Q | G | L | K | N | F | A | K | Q | E | C | D | A | V | R | I | A | R | N | N | L | E | T | A | G | I | H | C | A |
Template Known Secondary structure |   |
|
|  |  |  |  |  | B |
| S | S | S | S | S | S |
| B |
| T | T |
| T |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |
|
|
| G | G | G | G | G |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
  |
  |   |
63 | . | . | . | . | . | . | 70 |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
V | Y | A | G | M | P | Q | P |
Query Conservation |   |
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|   |
Template Sequence |   |
I | T | S | V | G | S | T | P |
Template Known Secondary structure |   |
 |  |  |  |
|
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
211 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|