Job Description P33022 Confidence 100.00% Date Thu Jan 5 11:50:57 GMT 2012 Rank 5 Aligned Residues 300 % Identity 39% Template c1yoeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose Resolution 1.78 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		E	K	R	K	I	I	L	D	C	D	P	G	H	D	D	A	I	A	I	M	M	A	A	K	H	P	A	I	D	L	L	G	I	T	I	V	A	G	N	Q	T	L	D	K	T	L	I	N	G	L	N	V	C	Q	K	L	E	I	.	N	V	P	V	Y	A	G	M	P	Q	P	I	M	R	Q	Q	I	V	A	D	N
Query Conservation																																																												.
Alig confidence																																																												.																	.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		S	A	L	P	I	L	L	D	C	D	P	G	H	D	D	A	I	A	I	V	L	A	L	A	S	P	E	L	D	V	K	A	I	T	S	S	A	G	N	Q	T	P	E	K	T	L	R	N	V	L	R	M	L	T	L	L	N	R	T	D	I	P	V	A	G	G	A	V	K	P	L	M	R	E	L	.	.	.	.	.
Template Known Secondary structure													S												T		T	T										S	S	S	S																T	T		T	T	S							S	S		S	S	S			.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	G	E	T	G	L	D	G	P	V	F	E	P	L	T	R	Q	A	E	S	T	H	A	V	K	Y	I	I	D	T	L	M	A	S	D	G	D	I	T	L	V	P	V	G	P	L	S	N	I	A	V	A	M	R	M	Q	P	A	I	L	P	K	I	R	E	I	V	L	M	G	G	A	Y	G	T	G	N	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	A	E	S	G	L	D	G	P	A	L	P	E	P	T	F	A	P	Q	N	C	T	A	V	E	L	M	A	K	T	L	R	E	S	A	E	P	V	T	I	V	S	T	G	P	Q	T	N	V	A	L	L	L	N	S	H	P	E	L	H	S	K	I	A	R	I	V	I	M	G	G	A	M	G	L	G	N	W	T
Template Known Secondary structure							S	S		S	S						S	S				S	S														S	S								S		S											G	G	G	G	G	G											S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	A	E	F	N	I	F	A	D	P	E	A	A	R	V	V	F	T	S	G	V	P	L	V	M	M	G	L	D	L	T	N	Q	T	V	C	T	P	D	V	I	A	R	M	E	R	A	G	G	P	A	G	E	L	F	S	D	I	M	N	F	T	L	K	T	Q	F	E	N	Y	G	L	A	G	G	P	V	H	D
Query Conservation
Alig confidence																																																																			.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		P	A	A	E	F	N	I	Y	V	D	P	E	A	A	E	I	V	F	Q	S	G	I	P	V	V	M	A	G	L	D	V	T	H	K	A	Q	I	H	V	E	D	T	E	R	F	R	A	I	G	N	P	V	S	T	I	V	A	E	L	L	D	F	F	L	E	.	.	.	.	K	W	G	F	V	G	A	P	L	H	D
Template Known Secondary structure		S	S																	T	S	S	S											T	T	S															S																.	.	.	.					S	S					T
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	C	I	G	Y	L	I	N	P	D	G	I	K	T	Q	E	M	Y	V	E	V	D	V	N	S	G	P	C	Y	G	R	T	V	C	D	E	L	G	V	L	G	K	P	A	N	T	K	V	G	I	T	I	D	T	D	W	F	W	G	L	V	E	E	C	V	R	G	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	T	I	A	W	L	L	K	P	E	L	F	T	S	V	E	R	W	V	G	V	E	T	Q	G	K	Y	T	Q	G	M	T	V	V	D	Y	Y	Y	L	T	G	N	K	P	N	A	T	V	M	V	D	V	D	R	Q	G	F	V	D	L	L	A	D	R	L	K	F	Y	A
Template Known Secondary structure											G	G	G													S		S	S		T	T						T	T			S	S																									G	G	G
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions