Job Description P05041 Confidence 100.00% Date Thu Jan 5 10:58:36 GMT 2012 Rank 13 Aligned Residues 377 % Identity 22% Template c3gseA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:menaquinone-specific isochorismate synthase; PDBTitle: crystal structure of menaquinone-specific isochorismate synthase from2 yersinia pestis co92 Resolution 2.28 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	F	Y	F	S	R	L	S	H	L	P	W	A	M	L	L	H	S	G	Y	A	D	H	P	Y	S	R	F	D	I	V	V	A	E	P	I	C	T	L	T	T	F	G	K	E	T	V	V	S	E	S	E	K	R	T	T	T	T	D	D	P	L	Q	V	L	Q	Q	V	L	D	R	A	D	I	R	P	T	H
Query Conservation
Alig confidence																							.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	L	E	W	L	T	A	Q	T	H	F	P	Q	F	Y	W	R	H	R	D	.	.	.	.	.	.	N	H	E	E	A	A	V	C	G	Q	T	R	S	F	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	D	A	D	D	F	I	Q	Q	N	P	D	A	N	G	L
Template Known Secondary structure		S							T				S								T	T	.	.	.	.	.	.	S	S													S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T		T	T		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		N	E	D	L	P	F	Q	G	G	A	L	G	L	F	G	Y	D	L	G	R	R	F	E	S	L	P	E	I	A	E	Q	D	I	V	L	P	D	M	A	V	G	I	Y	D	W	A	L	I	V	D	H	Q	R	H	T	V	S	L	L	S	H	N	D	V	N	A	R	R	A	W	L	E	S	Q	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	.	.	.	.	.	.	.	.	I	W	G	L	N	A	F	E	.	.	.	.	.	.	.	.	.	.	.	.	P	V	M	V	N	A	Q	A	S	F	L	F	L	P	R	L	E	I	L	R	R	G	K	K	T	S	L	T	L	N	L	S	S	E	T	S	L	Q	K	D	A	L	Q	A	I	T	F	I	D	Q	L
Template Known Secondary structure			.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																						T	T											S	S															T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93									.	.	.	.	.	.	100	.													.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
				171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																							.	.
Query SS confidence		.	.																																																							.	.
Query Sequence		.	.	Q	F	S	P	Q	E	D	F	T	L	T	S	D	W	Q	S	N	M	T	R	E	Q	Y	G	E	K	F	R	Q	V	Q	E	Y	L	H	S	G	D	C	Y	Q	V	N	L	A	Q	R	F	H	A	T	Y	S	G	.	.	D	E	W	Q	A	F	L	Q	L	N	Q	A	N	R	A	P	F	S	A	F	L	R
Query Conservation		.	.																																																							.	.
Alig confidence		.	.																															.	.	.																						.	.
Template Conservation																																		.	.	.
Template Sequence		M	A	A	R	A	L	P	V	L	N	A	R	I	Q	H	S	S	H	T	P	G	Y	P	Q	W	R	N	L	I	Q	Q	A	.	.	.	L	N	D	I	E	L	D	K	V	V	L	A	R	T	T	T	L	T	L	N	K	P	L	S	C	A	A	F	M	A	A	S	R	Q	V	N	H	R	C	Y	H	F	M	L	R
Template Known Secondary structure																					S													.	.	.																				S	S																T	T
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		247		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		L	.	E	Q	G	A	I	L	S	L	S	P	E	R	F	I	L	C	D	N	S	E	I	Q	T	R	P	I	K	G	T	L	P	R	L	P	D	P	Q	E	D	S	K	Q	A	V	K	L	A	N	S	A	K	D	R	A	E	N	L	M	I	V	D	L	M	R	N	D	I	G	R	V	A	V	A	G	S	V	K	V
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		F	D	D	R	Q	A	F	L	G	S	S	P	E	R	L	Y	L	R	Q	Q	L	H	L	E	T	E	A	L	A	G	T	V	S	N	L	D	S	D	P	Q	A	A	V	L	A	D	W	L	M	H	D	E	K	N	Q	R	E	N	L	L	V	V	D	D	I	C	Q	R	L	Q	G	G	V	T	A	V	D	V	M	P
Template Known Secondary structure		S	S	S	S																T	T															S	S													T																				G	G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	L	F	V	V	E	P	F	P	A	V	H	H	L	V	S	T	I	T	A	Q	L	P	E	Q	L	H	A	S	D	L	L	R	A	A	F	P	G	G	S	I	T	G	A	P	K	V	R	A	M	E	I	I	D	E	L	E	P	Q	R	R	N	A	W	C	G	S	I	G	Y	L	S	F	C	G	N	M	D	T
Query Conservation
Alig confidence		.	.	.																								.																																															.
Template Conservation		.	.	.																								.																																															.
Template Sequence		.	.	.	P	E	I	I	R	L	R	K	V	Q	H	L	R	R	R	I	C	A	Q	L	S	R	A	.	S	D	T	D	C	L	Q	R	L	Q	P	T	A	A	V	A	G	L	P	R	E	A	A	R	Q	F	I	A	K	H	E	L	F	S	R	G	W	Y	A	G	S	A	G	Y	L	S	.	L	K	R	T	E	F
Template Known Secondary structure		.	.	.							S	S													S	S		.										S	S								S														S			T	T	T	T	S							.	S	S
Template Predicted Secondary structure		.	.	.																								.																																															.
Template SS confidence
					326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	T	I	R	T	L	T	A	I	N	G	Q	I	F	C	S	A	G	G	G	I	V	A	D	S	Q	E	E	A	E	Y	Q	E	T	F	D	K	V	N	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	A	L	R	S	A	R	V	D	G	Q	Q	I	H	L	Y	A	G	A	G	I	V	A	G	S	D	A	E	Q	E	W	Q	E	I	L	Q	S	L	L	E	H
Template Known Secondary structure						S						T	T												T	T												G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.