Job Description P32140 Confidence 93.85% Date Thu Jan 5 11:49:26 GMT 2012 Rank 43 Aligned Residues 317 % Identity 12% Template c3renB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase, family 8; PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens Resolution 2.00 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	E	T	D	R	I	F	D	F	G	K	N	S	V	V	P	T	G	F	G	W	L	G	N	K	G	Q	I	K	E	E	M	G	T	H	L	W	I	T	A	R	M	L	H	V	Y	S	V	A	A	A	M	G	R	P	G	A	Y	S	L	V	D	H	G	I	K	A	M	N	G	A	L	R	D	K	K	Y	G	G
Query Conservation
Alig confidence																															.	.																												.	.	.	.													.	.
Template Conservation																															.	.																												.	.	.	.													.	.
Template Sequence		E	K	X	L	F	D	F	I	E	K	D	L	S	K	S	G	Y	G	I	Y	T	N	Y	I	D	K	S	D	I	.	.	T	K	G	H	S	V	L	S	E	S	E	G	L	X	X	L	Y	S	V	N	A	N	N	K	E	L	F	.	.	.	.	D	E	H	F	D	I	V	K	E	X	R	L	.	.	K	N	G	L
Template Known Secondary structure																T	T	T			B	S		S	S	S					.	.			T	T																	T	T						.	.	.	.										T	B		.	.	T	T	S	S
Template Predicted Secondary structure																															.	.																												.	.	.	.													.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		W	Y	A	C	V	N	D	E	G	V	V	D	A	S	K	Q	G	Y	Q	H	F	F	A	L	L	G	A	A	S	A	V	T	T	.	G	H	P	E	A	R	K	L	L	D	Y	T	I	E	I	I	E	K	Y	F	W	S	E	E	E	Q	M	C	L	E	S	W	D	E	A	F	S	K	T	E	E	Y	R	G	G	N
Query Conservation																																			.
Alig confidence												.																							.																										.	.	.	.	.	.
Template Conservation												.																																																	.	.	.	.	.	.
Template Sequence		I	S	W	R	K	E	G	D	E	N	.	S	P	S	S	A	T	I	D	E	L	R	I	I	K	A	L	L	L	A	N	N	R	W	N	S	F	Y	Y	K	F	Y	A	I	N	I	A	N	S	L	L	K	H	A	E	E	N	E	T	.	.	.	.	.	.	L	V	D	Y	I	D	N	Y	G	K	G	N	T	T	T
Template Known Secondary structure		B		S				T	T			.		S																																									T			T	T		.	.	.	.	.	.			S				S	S		B		S
Template Predicted Secondary structure												.																																																	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	M	H	A	V	E	A	F	L	I	V	Y	D	V	T	H	D	K	K	W	L	D	R	A	I	R	V	A	S	V	I	I	H	D	V	A	R	N	N	H	Y	R	V	N	E	H	F	D	T	Q	W	N	P	L	P	D	Y	N	K	D	N	P	A	H	R	F	R	A	F	G	G	T	P	G	H	W	I	E	W
Query Conservation
Alig confidence																	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	C	Y	L	D	L	P	T	X	K	L	L	S	Q	V	.	.	D	K	K	W	E	G	I	Y	E	K	S	N	S	I	I	E	N	G	K	I	S	E	E	V	P	L	Y	R	K	V	F	Y	E	E	T	Q	K	Y	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	N	V	D	F	L	L	S
Template Known Secondary structure		G	G	G											T	T	.	.		T															T	T	B			S	S	S			B		S				T	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.															.	.	.	250	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330
Predicted Secondary structure																																																						.																										.
Query SS confidence																																																						.																										.
Query Sequence		G	R	L	M	L	H	I	H	A	A	L	E	A	R	C	E	Q	P	P	A	W	L	L	E	D	A	K	G	L	F	N	A	T	V	R	D	A	W	A	P	D	G	A	D	G	I	V	Y	T	V	D	W	.	E	G	K	P	V	V	R	E	R	V	R	W	P	I	V	E	A	M	G	T	A	Y	A	L	Y	.	T
Query Conservation																																																						.																										.
Alig confidence												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.											.									.	.	.	.	.													.
Template Conservation												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		T	I	V	I	L	N	R	I	E	A	.	G	E	N	E	E	S	S	I	K	W	I	K	E	K	F	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	F	L	V	A	T	Y	N	G	K	N	G	D	A	T	S	Q	I	.	.	.	.	.	E	S	P	S	I	Y	S	N	V	A	L	I	A	N
Template Known Secondary structure											T	.	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S			S				T	T	T			B					.	.	.	.	.
Template Predicted Secondary structure												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.															.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		V	T	G	D	R	Q	Y	E	T	W	Y	Q	T	W	W	E	Y	C	I	K	Y	L	M	D	Y	E	.	N	G	S	W	W	Q	E	L	D	A	D	N	K	V	T	T	K	V	W	D	G	K	Q	D	I	Y	H	L	L	H	C	L	V	I	P	R
Query Conservation																												.
Alig confidence																												.				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	G	D	K	E	L	F	N	K	A	I	D	K	L	K	Y	Y	Q	I	K	N	K	D	S	V	L	Y	G	G	.	.	.	.	.	.	.	.	.	.	.	F	G	D	E	K	T	N	S	V	Y	S	F	D	N	L	N	A	L	L	A	F	Q
Template Known Secondary structure				T																S				T	T	S	T	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.		S	B	T	T	T	T	B														T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.												.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions