Job Description P32140 Confidence 41.10% Date Thu Jan 5 11:49:26 GMT 2012 Rank 66 Aligned Residues 96 % Identity 16% Template c3nfvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:alginate lyase; PDBTitle: crystal structure of an alginate lyase (bacova_01668) from bacteroides2 ovatus at 1.95 a resolution Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																												290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	H	A	A	L	E	A	R	C	E	Q	P	P	A	W	L	L	E	D	A	K	G	L	F	N	A	T	V	R	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	A	P	D	G	A	D	G	I	V	Y	T	V	D	W	E	G	K	P	V	V
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	A	K	V	K	E	K	A	D	S	P	L	Y	A	P	A	V	K	T	L	L	R	D	A	D	K	A	L	K	X	T	P	P	S	V	X	D	K	T	X	T	A	D	S	G	D	K	H	D	Y	X	S	X	G	P	Y	W	W	P	D	P	S	K	P	D	G	L	P	Y	I	R	K	D	G	Q	R	N	P	E
Template Known Secondary structure									T	T	T	S	T	T	T																	S					G	G	G	S	S	S			T	T	S		T	T	S						T	T					T	T	S	T	T			S					T	T				G	G
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		311	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		R	E	R	.	.	.	.	V	R	W	P	I	V	E	A	M	G	T	A	Y	A	L	Y	T	V	T	G	D	R	Q	Y	E	T	W	Y	Q	T	W	W	E	Y	C	I	K	Y	L	M	D	Y	E
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.																																		.	.	.
Template Conservation																																										.	.	.
Template Sequence		L	D	K	L	D	R	N	K	L	G	D	X	S	K	A	V	T	T	L	G	L	A	Y	Y	F	S	G	D	E	K	Y	A	Q	K	A	V	D	F	L	N	.	.	.	V	W	F	L	D	A	K
Template Known Secondary structure		G	G	G	S	S																																				.	.	.				T		T	T
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions