Job Description P32140 Confidence 99.72% Date Thu Jan 5 11:49:26 GMT 2012 Rank 5 Aligned Residues 240 % Identity 11% Template c3k7xA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. Resolution 1.89 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																			.	.	.																									.
Query SS confidence																																			.	.	.																									.
Query Sequence		G	A	Y	S	L	V	D	H	G	I	K	A	M	N	G	A	L	R	D	K	K	Y	G	G	W	Y	A	C	V	N	D	E	G	.	.	.	V	V	D	A	S	K	Q	G	Y	Q	H	F	F	A	L	L	G	A	A	S	A	V	T	T	.	G	H	P	E	A	R	K	L	L	D	Y	T	I	E	I	I	E	K	Y
Query Conservation																																			.	.	.																									.
Alig confidence																																			.	.	.																									.
Template Conservation
Template Sequence		K	W	S	E	Y	A	N	L	A	Q	Q	S	L	E	K	F	Y	L	A	D	T	K	E	Q	F	L	N	N	F	Y	P	T	E	N	P	E	E	D	N	K	V	F	N	Y	W	W	L	A	H	L	V	E	V	R	L	D	A	Y	L	R	T	K	K	Q	A	D	L	E	V	A	E	K	T	Y	L	H	N	K	N	R
Template Known Secondary structure																			B		S	S	T	T	T		B		S			S		S						T		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		F	W	S	E	E	E	Q	M	C	L	E	S	W	D	E	A	F	S	K	T	E	E	Y	R	G	G	N	A	N	M	H	A	V	E	A	F	L	I	V	Y	D	V	T	H	D	K	K	W	L	D	R	A	I	R	V	A	S	V	I	I	H	D	V	A	R	N	N	.	.	H	Y	R	V	N	E	H	F	D	T	Q
Query Conservation																																																																					.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.						.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.
Template Sequence		N	G	G	T	L	I	H	D	F	Y	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	L	W	N	A	L	A	A	Y	R	L	Y	K	A	T	G	K	S	I	Y	L	E	D	A	Q	L	V	W	Q	D	L	V	D	T	G	W	N	D	I	X	G	G	G	F	A	W	.	.	.	.	.	.
Template Known Secondary structure		T	T	S	S	S			S	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			T	B		S	G	G	G	S		B			.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.																	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	P	L	P	D	Y	N	K	D	N	P	A	H	R	F	R	A	F	G	G	T	P	G	H	W	I	E	W	G	R	L	M	L	H	I	H	A	A	L	E	A	R	C	E	Q	P	P	A	W	L	L	E	D	A	K	G	L	F	N	A	T	V	R	D	A	W	A	P	D	G	A	D	G	I	V	Y	T	V	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																							.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																							.	.
Template Sequence		R	R	P	Q	X	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	T	P	V	N	A	P	F	I	I	L	S	C	W	L	Y	N	E	L	N	E	.	.	.	.	.	.	T	K	Y	L	E	W	A	X	K	T	Y	E	W	Q	T	K	V	L	V	R	E	D	.	.	G	F	V	E	D	G	I	N
Template Known Secondary structure			T	T					.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																			B		T	T	.	.	S		B
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																							.	.
Template SS confidence
		140	.	.	.	.	.	.														.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.
		304			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		W	.	.	E	G	K	P	V	V	R	E	R	V	R	W	P	I	V	E	A	M	G	T	A	Y	A	L	Y	T	V	T	G	D	R	Q	Y	E	T	W	Y	Q	T	W	W	E	Y	C	I	K	Y	L
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		R	L	E	D	G	T	I	D	Y	E	W	K	F	T	Y	N	Q	G	V	Y	I	G	A	N	L	E	L	Y	R	I	T	K	E	A	I	Y	L	D	T	A	N	K	T	A	A	I	S	L	K	E	L
Template Known Secondary structure		T	T	S	S	S		B		T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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