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Job DescriptionP32140
Confidence4.60%DateThu Jan 5 11:49:26 GMT 2012
Rank85Aligned Residues243
% Identity10%Templatec2okxB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:rhamnosidase b; PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90.........100.........110.........120.........130.........140......
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Query Sequence  GRPGAYSLVDHGIKAMNGALRDKKYGGWYACVNDEGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEIIEKYF
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Template Sequence  SDALLNATWEISRHTTRLCMED. . . . . . . . . TFVDCPSY. EQVFWVGDSRNEALVNYYVFGETE. . . IVERCLNLVPGSA
Template Known Secondary structure  S
TBSS.........SB
S
TTT.T


BT


...GGGGT
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   542.......550.........560... ......570. ........580.........590..... ....600........
 
   147..150.........160.........170.........180.........190.........200.........210.... .....220..
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Query Sequence  WSEEEQMCLESWDEAFSKTEEYRGGNANMHAVEAFLIVYDVTHDKKWLDRAIRVASVIIHDVARNNHY. . . . RVNEHFDT
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Template Sequence  . . DETPLYLDQVPSAWSSVIP. . . . NWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLNMAGWNLL
Template Known Secondary structure  ..TT
TT

SBSS
S




....T
TTB
TTSSB
S



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   609610.........620....... ..630.........640.........650.........660.........670.........680..
 
   223......230.........240.........250.........260.........270.........280.........290.........300..
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Query Sequence  QWNPLPDYNKDNPAHRFRAFGGTPGHWIEWGRLMLHIHAALEARCEQPPAWLLEDAKGLFNATVRDAWAPDGADGIVYTV
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Template Sequence  DWAPIDQPNEGIVT. . . . . . . HQNLFLVKALRDSRALAAAAGA. . TEEADAFAARADLLAETINAVLWDEEK. RAYIDCI
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S.......T
..GGGGSTTT.T
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   683......690...... ...700.........710........ .720.........730.........740..... ....750..
 
   303......310.........320.........330.........340....
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Query Sequence  DWEGKPVVRERVRWPIVEAMGTAYALYTVTGDRQYETWYQTW
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Template Sequence  HADGRRSDVYS. . . . . . MQTQVVAYLCGVAQGEREAVIEGYL
Template Known Secondary structure  TTS
B



B......TT
S
T
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   753......760... ......770.........780........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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