Job Description P32140 Confidence 3.54% Date Thu Jan 5 11:49:26 GMT 2012 Rank 91 Aligned Residues 145 % Identity 18% Template c2fuqA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:heparinase ii protein; PDBTitle: crystal structure of heparinase ii Resolution 2.15 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	A	F	L	I	V	Y	D	V	T	H	D	K	K	W	L	D	R	A	I	R	V	A	S	V	I	I	H	D	V	A	R	N	N	H	Y	R	V	N	E	H	F	D	T	Q	W	N	P	L	P	D	Y	N	K	D	N	P	A	H	R	F	R	A	F	G	G	T	P	G	H	W	I	E	W	G	R	L	M	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	L	M	A	L	N	Y	L	M	T	K	D	P	K	V	G	R	E	A	I	T	S	I	I	D	T	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	T	F	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	D	I	S	R	G	I	G	L	F	M	V
Template Known Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.															.	.	.	140	.	.																			.	.	.	.	.	.	.	150	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	H	A	A	L	E	A	R	C	E	Q	P	P	A	W	L	L	E	D	A	K	G	L	F	N	A	T	V	R	D	A	W	A	P	D	G	A	D	G	I	V	Y	T	V	D	W	E	G	K	P	V	V	R	E	R	V	R	W	P	I	V	E	A	M	G	T	A	Y	A	L	Y	T	V	T	G	D	R	Q	Y
Query Conservation
Alig confidence																						.	.	.														.	.	.	.	.
Template Conservation																						.	.	.														.	.	.	.	.
Template Sequence		T	G	A	I	V	Y	D	W	C	Y	D	Q	L	K	P	E	E	K	T	R	.	.	.	F	V	K	A	F	V	R	L	A	K	M	L	E	.	.	.	.	.	C	G	Y	P	P	V	K	D	K	S	I	V	G	H	A	S	E	W	M	I	M	R	D	L	L	S	V	G	I	A	I	Y	D	E	F	P	E	M	Y
Template Known Secondary structure										T	G	G	G									.	.	.										T	T	S	T	.	.	.	.	.	T		S	S			S	S		S	S	S	S	G	G	G	S					T										T	T	T		T
Template Predicted Secondary structure																						.	.	.														.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		E	T	W	Y	Q	T	W	W	E	Y	C	I	K	Y	L	M	.	D	Y	E	N	G	S	W	W	Q
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		N	L	A	A	G	R	F	F	K	E	H	L	V	A	R	N	W	F	Y	P	S	H	N	Y	H	Q
Template Known Secondary structure											T									G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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