Phyre 2 alignment of P32140 with c1krfA

Job Description P32140
Confidence 75.92% Date Thu Jan 5 11:49:26 GMT 2012

Rank 59 Aligned Residues 283

% Identity 16% Template c1krfA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:mannosyl-oligosaccharide alpha-1,2-mannosidase; PDBTitle: structure of p. citrinum alpha 1,2-mannosidase reveals the basis for2 differences in specificity of the er and golgi class i enzymes

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	55	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70													.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure													.					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	M	L	H	V	Y	S	V	A	A	A	M	.	G	R	P	G	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	S	L	V	D	H	G	I	K	A	M	N	G	A	L	R	D	K	K	Y	G	G	W	Y	A	C	V	N	D	E	G	V	V	D	A	S	K	Q	G	Y	Q	H	F	F	A	L	L	G	A	A
Query Conservation													.					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	Y	L	A	G	M	L	S	G	Y	D	L	L	Q	G	P	A	K	N	L	V	D	N	Q	D	L	I	D	G	L	L	D	Q	S	R	N	L	A	D	V	L	K	F	A	F	D	T	P	S	G	V	P	Y	N	N	I	N	I	T	S	H	G	N	D	G	A	T	T	N	G	L	A	V	T	G	T	L	V	L	E
Template Known Secondary structure	T													T	T	T	T	T	T	S																						G	G	G	G		S	S	S	S				S				T	T	T	T						S									S	S
Template Predicted Secondary structure
Template SS confidence
	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

	122	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190
Predicted Secondary structure						.	.	.																								.	.	.	.	.	.																																									.	.
Query SS confidence						.	.	.																								.	.	.	.	.	.																																									.	.
Query Sequence	S	A	V	T	T	.	.	.	G	H	P	E	A	R	K	L	L	D	Y	T	I	E	I	I	E	K	Y	F	W	S	E	.	.	.	.	.	.	E	E	Q	M	C	L	E	S	W	D	E	A	F	S	K	T	E	E	Y	R	G	G	N	A	N	M	H	A	V	E	A	F	L	I	V	Y	D	V	T	H	.	.	D
Query Conservation						.	.	.																								.	.	.	.	.	.																																									.	.
Alig confidence						.	.	.																								.	.	.	.	.	.																											.														.	.
Template Conservation																																																																.
Template Sequence	W	T	R	L	S	D	L	T	G	D	E	E	Y	A	K	L	S	Q	K	A	E	S	Y	L	L	K	P	Q	P	S	S	S	E	P	F	P	G	L	V	G	S	S	I	N	I	N	D	G	Q	F	A	D	S	R	V	S	W	N	G	G	D	D	S	.	F	Y	E	Y	L	I	K	M	Y	V	Y	D	P	K	R	F
Template Known Secondary structure									S		T															S		S	S	G	G	G		S	B	T	T	B			S				T	T	T			B	S				B		S	S	T	T	T	T		.													T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence	K	K	W	L	D	R	A	I	R	V	A	S	V	I	I	H	D	V	A	R	N	N	H	Y	R	V	N	E	H	F	D	T	Q	W	N	P	L	P	D	Y	N	K	D	N	P	A	H	R	F	R	A	F	G	G	T	P	G	H	W	I	E	W	G	R	L	M	L	H	I	H	A	A	L	E	A	R	C	E	Q	P
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template Sequence	E	T	Y	K	D	R	W	V	L	A	A	E	S	T	I	K	H	L	K	S	H	P	K	S	R	P	D	L	T	F	L	S	S	Y	S	N	R	N	Y	D	L	S	S	Q	H	L	T	C	F	D	G	G	S	F	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	G	T	V	L	D	R	.	.	.	.	.
Template Known Secondary structure																		T					S	S		T	T									T	T								T	G	G	G	G									.	.	.	.	.	.	.	.	.	.	.	.					T		.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template SS confidence
	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.													.	.	.	.	.	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.															320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	A	W	L	L	E	D	A	K	G	L	F	N	A	T	V	R	D	A	W	A	P	D	G	A	D	G	I	V	Y	T	V	D	W	E	G	K	P	V	V	R	E	R	V	R	W	P	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	M	G	T	A	Y	A	L	Y	T	V	T	G	D	R	Q
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.																							.
Template Sequence	.	Q	D	F	I	D	F	G	L	E	L	V	D	G	C	E	A	T	Y	N	S	T	L	.	T	K	I	G	P	D	S	W	G	W	D	P	K	K	V	P	S	D	Q	K	E	F	Y	E	K	A	G	F	Y	I	S	S	G	S	Y	V	L	R	P	E	V	I	E	S	F	Y	Y	A	H	R	V	T	G	K	E	I
Template Known Secondary structure	.																				T	S	S	.	S	S				S						G	G	G			G	G	G								S								B		S
Template Predicted Secondary structure	.																							.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	E	T	W	Y	Q	T	W	W	E	Y	C	I	K	Y	L	M	D	Y	E	N	G
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence	Y	R	D	W	V	W	N	A	F	V	A	I	N	S	T	C	R	T	D	.	S	G
Template Known Secondary structure																	B		S	.	S	S
Template Predicted Secondary structure																				.
Template SS confidence
	426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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