Job Description P78067 Confidence 24.31% Date Thu Jan 5 12:33:09 GMT 2012 Rank 248 Aligned Residues 113 % Identity 11% Template c2c5sA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain Resolution 2.5 Å

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		35	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		L	Q	Q	Q	N	G	K	.	A	I	D	T	R	P	S	A	F	Y	N	G	W	P	Q	T	L	N	G	P	S	G	H	E	L	A	A	L	N	L	S	A	S	W	L	D	K	M	S	T	E	Q	L	N	A	W	I	K	Q	H	N	L	K	T	D	A	P	V	A	L	Y	G	N	D	K	D	V	D	A	V	K	T
Query Conservation									.
Alig confidence									.												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	N	P	D	V	N	V	R	V	E	I	R	S	G	Y	S	Y	I	.	.	.	.	.	.	.	.	M	C	D	E	R	M	G	A	G	G	L	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	G	G	K	V	M	V	L	L	S	G	G	I	D	S	P	V	A	A	Y
Template Known Secondary structure		S	S	S		S									S	S					.	.	.	.	.	.	.	.										S	B		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T									S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.									.	.	.	.	.	.	.	.	170	.	.	.	.																				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Q	K	A	G	L	T	H	I	S	I	L	S	D	A	L	S	E	P	S	R	L	Q	K	L	P	H	F	E	Q	L	V	Y	P	Q	W	L	H	D	L	Q	Q	G	K	E	V	T	A	K	P	A	G	D	W	K	V	I	E	A	A	W	G	A	P	K	L	Y	L	I	S	H	I	P
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	M	K	R	G	V	S	V	E	A	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	F	H	S	P	P	F	T	S	E	R	A	K	Q	K	V	I	D	L	A	Q	E	L	T	K	Y	C	K	R	V	T	L	H	L	V	P	F	T	E	V	Q	K	T	I	N	K	E	I	P
Template Known Secondary structure						B	T								.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	S																G	G	G	S	S																				S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.														.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions