Job Description P78067 Confidence 46.66% Date Thu Jan 5 12:33:09 GMT 2012 Rank 133 Aligned Residues 158 % Identity 16% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		K	T	D	A	P	V	A	L	Y	G	N	D	K	D	V	D	A	V	K	T	R	L	Q	K	A	G	L	T	H	I	S	I	L	S	D	A	L	S	.	.	E	P	S	R	L	Q	K	L	P	H	F	E	Q	L	V	Y	P	Q	W	L	H	D	L	Q	Q	G	K	E	V	T	A	K	P	A	G	D	W	K	V	I
Query Conservation																																								.	.
Alig confidence																																								.	.
Template Conservation
Template Sequence		A	Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	S	E	N
Template Known Secondary structure		G	G	G									S														T									S	S	S	S		S	T					T	S		T	T	T	S														T	T	T						S			B	S	T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220											.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	A	W	G	A	P	K	L	Y	L	I	S	H	.	.	.	.	.	.	.	.	I	P	G	A	D	Y	I	D	T	N	E	V	E	S	E	P	L	W	N	K	V	S	D	E	Q	L	K	A	M	L	A	K	H	G	I	.	.	.	.	.	.	.	.	.	.	R	H	D	T	T	V	I	L	Y	G	R	D	V
Query Conservation																.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.											.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.											.
Template Conservation				.	.																																																																										.
Template Sequence		E	I	.	.	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G	L	P	E	P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C	A	C	H	S	P	L	P	S	I	R	G	A	V	I	V	L	G	.	A	G
Template Known Secondary structure		S	B	.	.								T	T																	G	G	G	T	T			T	T	T	T																	T	T	T		S	S									S							.		S
Template Predicted Secondary structure				.	.																																																																										.
Template SS confidence
		265	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	A	A	R	V	A	Q	I	M	L	Y	A	G	V	K	D	V	R	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	A	F	D	C	A	T	S	A	L	R	C	G	A	R	R	V	F	L	V
Template Known Secondary structure														T	T		S
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions