Job Description P77256 Confidence 24.48% Date Thu Jan 5 12:26:53 GMT 2012 Rank 76 Aligned Residues 262 % Identity 11% Template c3pueA_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																									.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		G	P	A	W	N	G	D	L	D	R	Q	I	C	I	D	T	I	L	E	A	H	R	C	G	I	N	L	I	D	T	A	P	G	Y	N	F	G	N	S	.	.	.	.	.	.	E	V	I	V	G	Q	A	L	K	K	L	P	R	E	Q	V	V	V	E	T	K	C	G	I	V	W	E	R	.	.	.	.	.	.	.
Query Conservation																																									.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	M	L	K	D	G	G	V	D	W	K	S	L	E	K	L	V	E	W	H	I	E	Q	G	T	N	S	I	V	A	V	G	T	T	G	E	A	S	T	L	S	M	E	E	H	T	Q	V	I	K	E	I	I	R	V	A	N	K	R	I	P	I	I	A	G	T	G	A	N	S	T	R	E	A	I	E	L	T	K	A
Template Known Secondary structure			B		T	T	S		B																T							S	S	G	G	G	T	G	G	G	S																		S	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
				93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	K	G	S	L	F	N	K	V	G	D	R	Q	L	Y	K	N	L	S	P	E	S	I	R	E	E	V	A	A	S	L	Q	R	L	G	I	D	Y	I	D	I	Y	M	T	H	W	Q	S	V	P	P	F	F	T	P	I	A	E	T	V	A	V	L	N	E	L	K	S	E	G	K	I	R	A	I	G	A	A	N
Query Conservation		.	.
Alig confidence		.	.																																			.	.	.																					.	.	.	.
Template Conservation																																						.	.	.																					.	.	.	.
Template Sequence		A	K	D	L	G	A	D	A	A	L	L	V	T	P	Y	Y	N	K	P	T	Q	E	G	L	Y	Q	H	Y	K	A	I	A	E	A	V	E	.	.	.	L	P	L	I	L	Y	N	V	P	G	R	T	G	V	D	L	S	N	D	T	.	.	.	.	A	V	R	L	A	E	I	P	N	I	V	G	I	K	D	A	T
Template Known Secondary structure					T	T		S									S	S																				.	.	.	S												S								.	.	.	.					T	T	S	T	T								S
Template Predicted Secondary structure																																						.	.	.																					.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	D	H	I	R	E	Y	L	Q	Y	G	E	L	D	I	I	Q	A	K	Y	S	I	L	D	R	A	M	E	N	E	L	L	P	L	C	R	D	N	G	I	V	V	Q	V	Y	S	P	L	E	Q	G	L	L	T	G	T	I	T	R	D	Y	V	P	G	G	A	R	A	N	K	V	W	F	Q	R	E	N	M
Query Conservation
Alig confidence																							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	V	P	R	G	K	A	L	I	D	A	L	N	G	K	M	A	V	Y	S	.	.	.	.	.	.	.	G	D	D	E	T	A	W	E	L	M	L	L	G	A	D	G	N	I	S	V	T	A	N	I	.	.	.	.	.	.	.	.	.	.	.	A	P	K	A	M	S	E	V	C	A	V	A	I	A	K	D	E
Template Known Secondary structure														S	S	T	T	S					.	.	.	.	.	.	.												T	T							S	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.								.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.												210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	V	I	D	M	L	E	Q	W	Q	P	L	C	A	R	Y	Q	C	T	I	P	T	L	A	L	A	W	I	L	K	Q	S	D	L	I	S	I	L	S	G	A	T	A	P	E	Q	V	R	E	N	V	A	A	L	N	I	N	L	S	D	A	D	A	T	L	M	R	E	M	A	E	A	L
Query Conservation
Alig confidence																																					.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.									.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	A	K	T	L	N	N	K	I	A	N	L	H	N	I	L	F	C	E	S	N	P	I	P	V	K	W	A	L	H	E	M	G	L	.	.	I	D	T	G	I	R	L	P	.	.	.	.	.	.	.	.	.	.	L	T	P	L	A	E	Q	Y	R	E	P	L	R	N	A	L	K	D	A
Template Known Secondary structure										T	T							T	T	S	S	S	T	T									T	T	T	S	.	.	S		B				T	T	.	.	.	.	.	.	.	.	.	.	S																		T
Template Predicted Secondary structure																																					.	.									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions