Job Description P77256 Confidence 100.00% Date Thu Jan 5 12:26:53 GMT 2012 Rank 3 Aligned Residues 313 % Identity 34% Template c3n2tA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	K	I	P	L	G	T	T	D	I	T	L	S	R	M	G	L	G	T	W	A	I	G	G	G	P	A	W	N	G	D	L	D	R	Q	I	C	I	D	T	I	L	E	A	H	R	C	G	I	N	L	I	D	T	A	P	G	Y	N	F	G	N	S	E	V	I	V	G	Q	A	L	K	K	L	P	R	E	Q	V
Query Conservation
Alig confidence																											.	.																																																	.
Template Conservation																											.	.																																																	.
Template Sequence		S	D	T	I	R	I	P	G	I	D	T	P	L	S	R	V	A	L	G	T	W	A	I	G	G	.	.	W	M	W	G	G	P	D	D	D	N	G	V	R	T	I	H	A	A	L	D	E	G	I	N	L	I	D	T	A	P	V	Y	G	F	G	H	S	E	E	I	V	G	R	A	L	A	E	K	.	P	N	K	A
Template Known Secondary structure		T	S					T	T		S	S				S						T	T	S	S		.	.	S	S	S		S	T	T														T	T								T	T	G	G	G	G													S	.
Template Predicted Secondary structure																											.	.																																																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	E	T	K	C	G	I	V	W	E	R	K	G	S	L	F	N	K	V	G	D	R	Q	L	Y	K	N	L	S	P	E	S	I	R	E	E	V	A	A	S	L	Q	R	L	G	I	D	Y	I	D	I	Y	M	T	H	W	Q	S	V	P	P	F	F	T	P	I	A	E	T	V	A	V	L	N	E	L	K	S	E
Query Conservation
Alig confidence															.	.	.	.	.																																												.	.	.
Template Conservation															.	.	.	.	.																																												.	.	.
Template Sequence		H	V	A	T	K	L	G	L	H	W	V	G	E	.	.	.	.	.	D	E	K	N	M	K	V	F	R	D	S	R	P	A	R	I	R	K	E	V	E	D	S	L	R	R	L	R	V	E	T	I	D	L	E	Q	I	H	W	P	D	D	K	.	.	.	T	P	I	D	E	S	A	R	E	L	Q	K	L	H	Q	D
Template Known Secondary structure													S	S	.	.	.	.	.	S	T	T	T																								T		S	S							S	S			T	T	.	.	.	S															T
Template Predicted Secondary structure															.	.	.	.	.																																												.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		G	K	I	R	A	I	G	A	A	N	V	D	A	D	H	I	R	E	Y	L	Q	Y	G	E	L	D	I	I	Q	A	K	Y	S	I	L	D	R	A	M	E	N	E	L	L	P	L	C	R	D	N	G	I	V	V	Q	V	Y	S	P	L	E	Q	G	L	L	T	G	T	I	T	R	D	.	.	Y	V	P	G	G	A
Query Conservation																																																																										.	.
Alig confidence																																																																										.	.
Template Conservation
Template Sequence		G	K	I	R	A	L	G	V	S	N	F	S	P	E	Q	M	D	I	F	R	E	V	A	P	L	A	T	I	Q	P	P	L	N	L	F	E	R	T	I	E	K	D	I	L	P	Y	A	E	K	H	N	A	V	V	L	A	Y	G	A	L	C	R	G	L	L	T	G	K	M	N	R	D	T	T	F	P	K	D	D	L
Template Known Secondary structure		T	S								S													S								B		B	T	T	B		G	G	G	G	T									T						B		T	T	G	G	G	G	G	G	T				T	T					T	T	S	G
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	N	K	V	W	F	Q	R	E	N	M	L	K	V	I	D	M	L	E	Q	W	Q	P	L	C	A	R	Y	Q	C	T	I	P	T	L	A	L	A	W	I	L	K	Q	S	D	L	I	S	I	L	S	G	A	T	A	P	E	Q	V	R	E	N	V	A	A	L	N	I	N	L	S	D	A	D	A	T	L	M	R
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		R	S	N	D	P	K	F	Q	K	P	N	F	E	K	Y	L	A	A	M	D	E	F	E	K	L	A	E	K	R	G	K	S	V	M	A	F	A	V	R	W	V	L	D	Q	G	P	V	.	I	A	L	W	G	A	R	K	P	G	Q	V	S	G	V	K	D	V	F	G	W	S	L	T	D	E	E	K	K	A	V	D
Template Known Secondary structure		G	G	G		G	G	G	S	T	T																			T	T													T	T	T	T		.							S	S	G	G	G	G	T	T					S	S
Template Predicted Secondary structure																																																	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		319	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	E	A	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	L	A	R	H	V
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions