Job Description P77256 Confidence 20.51% Date Thu Jan 5 12:26:53 GMT 2012 Rank 86 Aligned Residues 257 % Identity 11% Template c3daqB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus Resolution 1.45 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query Sequence		G	D	L	D	R	Q	I	C	I	D	T	I	L	E	A	H	R	C	G	I	N	L	I	D	T	A	P	G	Y	N	F	G	N	S	.	.	.	.	.	.	E	V	I	V	G	Q	A	L	K	K	L	P	R	E	Q	V	V	V	E	T	K	C	G	I	V	W	E	R	.	.	.	.	.	.	.	.	.	K	G	S
Query Conservation																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	V	N	L	E	A	L	K	A	H	V	N	F	L	L	E	N	N	A	Q	A	I	I	V	N	G	T	T	A	E	S	P	T	L	T	T	D	E	K	E	L	I	L	K	T	V	I	D	L	V	D	K	R	V	P	V	I	A	G	T	G	T	N	D	T	E	K	S	I	Q	A	S	I	Q	A	K	A	L	G
Template Known Secondary structure		T																	T	T							S	S	G	G	G	T	G	G	G	S																	T	T	S	S									S																T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	N	K	V	G	D	R	Q	L	Y	K	N	L	S	P	E	S	I	R	E	E	V	A	A	S	L	Q	R	L	G	I	D	Y	I	D	I	Y	M	T	H	W	Q	S	V	P	P	F	F	T	P	I	A	E	T	V	A	V	L	N	E	L	K	S	E	G	K	I	R	A	I	G	A	A	N	V	D	A	D	H
Query Conservation
Alig confidence																																	.	.	.																					.	.	.	.
Template Conservation																																	.	.	.																					.	.	.	.
Template Sequence		A	D	A	I	M	L	I	T	P	Y	Y	N	K	T	N	Q	R	G	L	V	K	H	F	E	A	I	A	D	A	V	K	.	.	.	L	P	V	V	L	Y	N	V	P	S	R	T	N	M	T	I	E	P	E	T	.	.	.	.	V	E	I	L	S	Q	H	P	Y	I	V	A	L	K	D	A	T	N	D	F	E	Y
Template Known Secondary structure			S									S	S																				.	.	.	S												S								.	.	.	.						T	S	T	T
Template Predicted Secondary structure																																	.	.	.																					.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	Y	L	Q	Y	G	E	L	D	I	I	Q	A	K	Y	S	I	L	D	R	A	M	E	N	E	L	L	P	L	C	R	D	N	G	I	V	V	Q	V	Y	S	P	L	E	Q	G	L	L	T	G	T	I	T	R	D	Y	V	P	G	G	A	R	A	N	K	V	W	F	Q	R	E	N	M	L	K	V	I	D
Query Conservation
Alig confidence															.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	E	V	K	K	R	I	D	T	N	S	F	.	.	.	.	.	A	L	Y	S	G	N	D	D	N	V	V	E	Y	Y	Q	R	G	G	Q	G	V	I	S	V	I	A	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	K	E	F	Q	A	L	Y	D	A	Q	Q	S	G	L	D	I	Q	D
Template Known Secondary structure							T	T	S		T	T	T	S	.	.	.	.	.					S		G	G	G							T	T							S	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure															.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.															.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	E	Q	W	Q	P	L	C	A	R	Y	Q	C	T	I	P	T	L	A	L	A	W	I	L	K	Q	S	D	L	I	S	I	L	S	G	A	T	A	P	E	Q	V	R	E	N	V	A	A	L	N	I	N	L	S	D	A	D	A	T	L	M	R	E	M	A	E	A	L	E
Query Conservation
Alig confidence																																.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.									.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	K	P	I	G	T	L	L	S	A	L	S	V	D	I	N	P	I	P	I	K	A	L	T	S	Y	L	G	F	.	.	G	N	Y	E	L	R	L	P	.	.	.	.	.	.	.	.	.	.	L	V	S	L	E	D	T	D	T	K	V	L	R	E	A	Y	D	T	F	K
Template Known Secondary structure														T	T	S	S	T	T	T	T								T	T	S	.	.	S		S				T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270											.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions