Job Description P77256 Confidence 22.43% Date Thu Jan 5 12:26:53 GMT 2012 Rank 83 Aligned Residues 258 % Identity 12% Template c2rfgB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution Resolution 1.50 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Query Sequence		G	D	L	D	R	Q	I	C	I	D	T	I	L	E	A	H	R	C	G	I	N	L	I	D	T	A	P	G	Y	N	F	G	N	S	.	.	.	.	.	.	E	V	I	V	G	Q	A	L	K	K	L	P	R	E	Q	V	V	V	E	T	K	C	G	I	V	W	E	R	.	.	.	.	.	.	.	.	.	K	G	S
Query Conservation																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	V	D	E	K	A	L	A	G	L	V	D	W	Q	I	K	H	G	A	H	G	L	V	P	V	G	T	T	G	E	S	P	T	L	T	E	E	E	H	K	R	V	V	A	L	V	A	E	Q	A	Q	G	R	V	P	V	I	A	G	A	G	S	N	N	P	V	E	A	V	R	Y	A	Q	H	A	Q	Q	A	G
Template Known Secondary structure		T																	T	T		S				T	T	S	G	G	G	T	G	G	G	S																	T	T	S	S		B							S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	N	K	V	G	D	R	Q	L	Y	K	N	L	S	P	E	S	I	R	E	E	V	A	A	S	L	Q	R	L	G	I	D	Y	I	D	I	Y	M	T	H	W	Q	S	V	P	P	F	F	T	P	I	A	E	T	V	A	V	L	N	E	L	K	S	E	G	K	I	R	A	I	G	A	A	N	V	D	A	D	H
Query Conservation
Alig confidence																																	.	.	.																					.	.	.	.
Template Conservation																																	.	.	.																					.	.	.	.
Template Sequence		A	D	A	V	L	C	V	A	G	Y	Y	N	R	P	S	Q	E	G	L	Y	Q	H	F	K	M	V	H	D	A	I	D	.	.	.	I	P	I	I	V	Y	N	I	P	P	R	A	V	V	D	I	K	P	E	T	.	.	.	.	M	A	R	L	A	A	L	P	R	I	V	G	V	K	D	A	T	T	D	L	A	R
Template Known Secondary structure			S								T	T	T																			S	.	.	.	S												S								.	.	.	.						T	S	T	T								S			T	T
Template Predicted Secondary structure																																	.	.	.																					.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	Y	L	Q	Y	G	E	L	D	I	I	Q	A	K	Y	S	I	L	D	R	A	M	E	N	E	L	L	P	L	C	R	D	N	G	I	V	V	Q	V	Y	S	P	L	E	Q	G	L	L	T	G	T	I	T	R	D	Y	V	P	G	G	A	R	A	N	K	V	W	F	Q	R	E	N	M	L	K	V	I	D
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	R	E	R	M	L	I	N	K	P	F	S	F	L	S	.	.	.	.	.	.	.	G	D	D	M	T	A	I	A	Y	N	A	S	G	G	Q	G	C	I	S	V	S	A	N	I	.	.	.	.	.	.	.	.	.	.	.	A	P	A	L	Y	G	Q	M	Q	T	A	T	L	Q	G	D	F	R	E	A	L	R
Template Known Secondary structure							T	T			S							.	.	.	.	.	.	.	S		G	G	G							T	T							S	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.												.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		M	L	E	Q	W	Q	P	L	C	A	R	Y	Q	C	T	I	P	T	L	A	L	A	W	I	L	K	Q	S	D	L	I	S	I	L	S	G	A	T	A	P	E	Q	V	R	E	N	V	A	A	L	N	I	.	N	L	S	D	A	D	A	T	L	M	R	E	M	A	E	A	L	E	R
Query Conservation																																																						.
Alig confidence																																		.	.							.	.	.	.	.	.	.	.	.	.	.		.
Template Conservation																																		.	.							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	D	L	L	A	P	L	H	E	A	L	F	R	E	P	S	P	A	G	A	K	Y	A	A	S	L	L	G	L	C	N	.	.	E	E	C	R	L	P	.	.	.	.	.	.	.	.	.	.	.	I	V	P	L	S	E	Q	T	K	S	D	I	K	N	I	I	N	E	L	Y	R
Template Known Secondary structure															S	S	S	T	T										T	T	S	S		.	.					T	T	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																		.	.							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.												.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions