Return to main results Retrieve Phyre Job Id

Job DescriptionP33937
Confidence100.00%DateThu Jan 5 11:52:56 GMT 2012
Rank25Aligned Residues617
% Identity19%Templated1vlfm2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70 .........80.........90.........100.....
Predicted Secondary structure 












..................

















Query SS confidence 


























. . . . . . . . . . . . . . . . . .


































Query Sequence  APCRFCGTGCGVLVGTQQGRVVACQGD. . . . . . . . . . . . . . . . . . PDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMK
Query Conservation 
 
  
   
 
 
 
 

 



 

..................   
   
  
 

       
 



  



 
Alig confidence 


























..................


































Template Conservation       
  

 
 
 








                
  
    
   
  
 

       
 



  



 
Template Sequence  VRLTNSSTGGPVFVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPYPMKRKS
Template Known Secondary structure 

TT

TT

B

TTTS




TT


SB



TTT
TTB

S
TT
Template Predicted Secondary structure 















































Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   106...110.... .....120.........130.........140...... ...150.........160.. ..
Predicted Secondary structure 








..................




.




..
Query SS confidence 








. . . . . . . . . . . . . . . . . .































.















. .

Query Sequence  NGKYDKEGE. . . . . . . . . . . . . . . . . . FTPITWDQAFDVMEEKFKTALKEKGPESIGMF. GSGQWTIWEGYAASKL. . FK
Query Conservation      

 
 ..................   






  

 

       
   
   .                ..  
Alig confidence  ...





..................































.















..

Template Conservation  ... 

 
                      






  

 

  
    

 

                     

 
Template Sequence  . . . FDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFM
Template Known Secondary structure  ...

TTS


GGGTTTT
GGGG

T
GGG

S


S
TTTSTTT
Template Predicted Secondary structure  ...


































Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160.
 
   165....170....... ..180.........190.........200.. .......210.........220.. .......230.....
Predicted Secondary structure 








.....










.




...


Query SS confidence 












. . . . .
























.



















. . .












Query Sequence  AGFRSNNIDPNAR. . . . . HCMASAVVGFMRTFGMDEPMGCYDD. IEQADAFVLWGANMAEMHPI. . . LWSRITNRRLSNQ
Query Conservation     

        ..... 
            
         
.   
  

  
 
       ...       
     
Alig confidence 












.....
























.



















...












Template Conservation     
                      
     
          
  

  

  
 
                   
   
Template Sequence  NMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDL
Template Known Secondary structure 




TTTT

GGGTT



TT
SS


SSS
TTTTT
Template Predicted Secondary structure 



































Template SS confidence 















































































   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   236...240.........250.. .......260.........270.........280.........290.........300.........310....
Predicted Secondary structure 






.






























Query SS confidence 
















.





























































Query Sequence  NVTVAVLSTYQHRSFEL. ADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAK
Query Conservation 
 






  
 

  .

 








 

 

    

     
  

   
                        
Alig confidence 
















.





































........................
Template Conservation 









 
 

   

 








 

 


   

    

  

   
........................
Template Sequence  GVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANA. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

SS


S


TT
T
S
........................
Template Predicted Secondary structure 




















........................
Template SS confidence 















































































   242.......250.........260.........270.........280.........290.......
 
   315....320.........330... ......340.........350.........360.........370. ........380.....
Predicted Secondary structure 










......










...





Query SS confidence 


















. . . . . .





































. . .













Query Sequence  NPGSDASEPMSFEDYKAFV. . . . . . AEYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWT. . . MGFNQHTRGVWANN
Query Conservation             
  
    ......   


 

 




   
  

   
          
... 
      
    
Alig confidence  .........









......





































...













Template Conservation  ......... 
                 


 
  



  
 
  

   
               
      
     
Template Sequence  . . . . . . . . . HGFEEWADYVLGKTDGTPKTCEWAEEESGVPACEIRALARQWAKKNTYLAAGGLGGWGGACRASHGIEWAR
Template Known Secondary structure  .........STTTTTS






S
TTTTS

GGGSSTT
Template Predicted Secondary structure  .........





























Template SS confidence 















































































   298.300.........310.........320.........330.........340.........350.........360........
 
   386...390.........400.........410.........420.........430.........440.........450.........460.....
Predicted Secondary structure 
















































Query SS confidence 















































































Query Sequence  LVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQD
Query Conservation 
   
  
 



  


     
     
            
                                     
Alig confidence 









.




































































Template Conservation 
   
  
 
. 
  

                                                               
Template Sequence  GMIALATMQG. MGKPGSNMWSTTQGVPLDYEFYFPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSAGQHI
Template Known Secondary structure  TT.TTSTT


SSS




TTS



GGG
TTS

TTTSGGGTT

SSS





SSSSTTS
Template Predicted Secondary structure 
.


































































Template SS confidence 















































































   369370........ .380.........390.........400.........410.........420.........430.........440.......
 
   466... 470.........480.........490.........500.........510
Predicted Secondary structure 


...................................














Query SS confidence 



. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .








































Query Sequence  RALK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDP
Query Conservation      ................................... 
 

       

                 

   
  
 
Alig confidence 



...................................








































Template Conservation         
                                  

 
     


 
         

   





  
 
Template Sequence  PRLKIPECIMGGKFQWSGKGFAGGDISHQLHQYEYPAPGYSKIKMFWKYGGPHLGTMTATNRYAKMYTHDSLEFVVSQSI
Template Known Secondary structure  GGGS


SS

SSTTGGG
S
TT




S

SSSTTT
TT

S
Template Predicted Secondary structure 









































Template SS confidence 















































































   448.450.........460.........470.........480.........490.........500.........510.........520.......
 
   511........520.........530.... .....540.........550.........560.........570......
Predicted Secondary structure 















..............


















Query SS confidence 























. . . . . . . . . . . . . .









































Query Sequence  YPTVSALAADLILPTAMWVEKEGA. . . . . . . . . . . . . . YGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWP
Query Conservation     


  





     
  
 ..............              
 
  


 
  
   

 


      
Alig confidence 























..............









































Template Conservation    



  





  
 

  
                            



 



 
  
   

 


      
Template Sequence  WFEGEVPFADIILPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLNIEEMFS
Template Known Secondary structure  BS
TTGGG
SB

GGGS
TT

BTTBTTGGGGSSS



S

STT
B
TT
Template Predicted Secondary structure 











































Template SS confidence 















































































   528.530.........540.........550.........560.........570.........580.........590.........600.......
 
   577..580.........590.........600.........610.........620.........630.........640.........650......
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  EDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGL
Query Conservation                                                                                  
Alig confidence 








......































































.
Template Conservation           ......               
     
                                          .
Template Sequence  EGKDELAWC. . . . . . EQYFNATDMPKYMTWDEFFKKGYFVVPDNPNRKKTVALRWFAEGREKDTPDWGPRLNNQVCRKG.
Template Known Secondary structure  TT

......TSSGGGT






TTS



TTTTS


SS
S
S
GGGSBTTBS.
Template Predicted Secondary structure 



......














































.
Template SS confidence 















































































   608.610...... ...620.........630.........640.........650.........660.........670.........680
 
   657..660.........670.........680.........690.........700.........710......
Predicted Secondary structure 





















































Query SS confidence 



























































Query Sequence  RWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWL
Query Conservation                                                         


 
Alig confidence  .



















...........



























Template Conservation  .  






 

  
     ...........        
  
 
 
  
     

  
Template Sequence  . LQTTTGKVEFIATSLKNFEE. . . . . . . . . . . QGYIDEHRPSMHTYVPAWESQKHSPLAV
Template Known Secondary structure  .
SSTTSSSB
...........TT


TTS
SB





TTSTTT
GGG
Template Predicted Secondary structure  .








...........



























Template SS confidence 



























































   681........690.........700 .........710.........720........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions