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Job DescriptionP33937
Confidence100.00%DateThu Jan 5 11:52:56 GMT 2012
Rank17Aligned Residues709
% Identity20%Templated1kqfa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50......... 60.........70.........80.........90.........100..
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Query Sequence  RAVVGQQEAIKWDKAPCRFCGTGCGVLVGT. . . . . . . QQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
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Template Sequence  QARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEY
Template Known Secondary structure 




TTTTS
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S
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   34.....40.........50.........60.........70.........80.........90.........100.........110...
 
   103......110.........120.........130.........140 .........150.........160.........170
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Query Sequence  RMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGP. . . . . . . . . . . . ESIGMFGSGQWTIWEGYAASKLFKAGFRSN
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Template Sequence  RAP. . . . . GSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARS. LGML
Template Known Secondary structure 
T.....T
SS




TTS
B
S

TTS
.TTB
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   114.. ...120.........130.........140.........150.........160.........170.........180... ....
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  NIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSF
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Template Sequence  AVDNQAR. VHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEA. KNNNDATLIVVDPRFTRTA
Template Known Secondary structure 

GGG.

S

S
SS
TGGGGG
SS

STTTT.S


SS

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   188.190.... .....200.........210.........220.........230.........240...... ...250.........260.....
 
   251........260.........270.........280.........290.........300........ .310.
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Query Sequence  ELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHP. . . . . . . . . . . . . . . . . . . LEK
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Template Sequence  SVADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENG
Template Known Secondary structure  T
S


TT
TT
S
BSTTBBB
TT

TTTTTTTT

TTSSB
B
TTS
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   267..270.........280.........290.........300.........310.........320.........330.........340......
 
   312.......320.........330.........340.........350.........360... ......370.........380........
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Query Sequence  AAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADPN. . . KKVISYWTMGFNQHTRGVWANNLVY
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Template Sequence  YAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMA
Template Known Secondary structure  SB
B
TTS
STTBTT




GGGSTT

SSSTT
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   347..350.........360.........370.........380.........390.........400.........410.........420......
 
   389390.........400.........410.........420.........430.........440.........450.......
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Query Sequence  NLHLLTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKI. . . . . . . . . . .
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Template Sequence  MIQLLLGNMGMAGGGVNALRGHSNIQG. LTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFF
Template Known Secondary structure  T
TT
TT
S


BTT.TT
STTGGG

BTT

SS


SSSS


GGGG
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   427..430.........440.........450... ......460.........470.........480.........490.........500.....
 
   458.460.........470.........480.........490.........500.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSD
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Template Sequence  VSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVV. . SCLSKLKYMVVID
Template Known Secondary structure  GGG

GGGGGGGGGS

BSS


TT


S

SSS..TT
S
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   506...510.........520.........530.........540.........550.........560.........570 .........580...
 
   510......... 520.........530.........540.........550.........560.........570
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Query Sequence  PYPTVSALAA. . . . . . . . . . . . . . . . . DLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFK. .
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Template Sequence  PLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLREL
Template Known Secondary structure  SB

TTTTTTS

GGGG


GGG


B

GGGS

TT



S

STT
B
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   584.....590.........600.........610.........620.........630.........640.........650.........660...
 
   571........580.........590.........600.........610.........620.........630.........640.......
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Query Sequence  . . . TEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPF
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Template Sequence  YQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSW
Template Known Secondary structure 

SSS



SSTTS


SS

TTS

TT
B
S
GGG

SSSS
S
GGGTTS
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   664.....670.........680.........690.........700.........710.........720.........730.........740...
 
   648.650.........660.........670.........680.........690.........700........ .710.........720......
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Query Sequence  DDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAP. DEEYDLWLSTGRVLEHWH
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Template Sequence  TEQGNQMANR. . . . . . . . . . . . . . DNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSK. . . . W
Template Known Secondary structure  TTGGG
B..............



TTSSS

TTBSTTTT
SSTTGGGGB
TTS
BSSTTS


SSS....
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   744.....750... ......760.........770.........780.........790.........800.... .
 
   727..730.........740.........750...... ...760.......
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Query Sequence  TGSMTRRVPELHRAFPEAVLFIHPLDAKAR. . . . DLRRGDKVKVV
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Template Sequence  TGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHY
Template Known Secondary structure  SS

SS
S

TTSS

S
TTSTTSSB
SS
TT
STT
SS



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   806...810.........820.........830.........840.........850
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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