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Job DescriptionP33937
Confidence100.00%DateThu Jan 5 11:52:56 GMT 2012
Rank18Aligned Residues662
% Identity20%Templated1h0ha2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RAVVGQQEAIKWDKAPCRFCGTGCGVLVGT. . QQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNG
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Template Sequence  ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAP. .
Template Known Secondary structure 




TTTTS
SSBTT


TTT


TT
TTTTT


TS
TTS
SS

T..
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   1........10.........20.........30.........40.........50.........60.........70........
 
   108.110.........120.........130.........140.. .......150.........160.........170.....
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Query Sequence  KYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPES. . . . . . . . . . . . IGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPN
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Template Sequence  . . . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRS. LGLFYIEHQ
Template Known Secondary structure  ...T
SS



TTS

S

TTS
.TTB


G
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   7980.........90.........100.........110.........120.........130.........140..... ....150....
 
   176...180.........190.........200.........210.........220.........230.........240.........250.....
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Query Sequence  ARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADN
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Template Sequence  AR. IHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAK. . DKGATLIHVDPRYTRTSTKCDL
Template Known Secondary structure  GG.

S

S
SS
TGGGGG
SS

STT..TT

SS

TTGGG
S
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   155. ...160.........170.........180.........190.........200......... 210.........220.........230.
 
   256...260.........270.........280.........290.........300....... ..310......
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Query Sequence  GIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTH. . . . . . . . . . . . . . . . . . . PLEKAAKNP
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Template Sequence  YAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRD
Template Known Secondary structure 


TT
TT
S
BGGGBBB
TT

TTTTTTTT
GGGG
B
B
TTS
B
B
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   233......240.........250.........260.........270.........280.........290.........300.........310..
 
   317..320.........330.........340.........350.........360.. .......370.........380.........390...
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Query Sequence  GSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADP. . . NKKVISYWTMGFNQHTRGVWANNLVYNLHLL
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Template Sequence  ETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLL
Template Known Secondary structure  TTS
STTBTT




GGGSTT





SS
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   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   394.....400.........410.........420.........430.........440.........450..
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Query Sequence  TGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGT. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LGNIGVAGGGVNALRGEANVQG. STDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIK
Template Known Secondary structure  TT
SSSTT
S

SBTT.TT
BTTTTT

BTT

S





TT


GGGG
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   393......400.........410.... .....420.........430.........440.........450.........460.........470.
 
   453......460.........470.........480.........490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . . . . IPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVS
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Template Sequence  SMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTR. . EALTKLDWMVNVNIFDNET
Template Known Secondary structure 
TTS
S

B
TT


STT


S

SSS..TT
SSS

TT
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   472.......480.........490.........500.........510.........520.........530 .........540.........
 
   516.. .520.........530.........540.........550.........560.........570 .......
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Query Sequence  ALA. . . . . . . . . . . . . ADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFK. . . . . TEEVWPE
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Template Sequence  GSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAA
Template Known Secondary structure  TTGGGSTT

GGG


B

GGG


TT


SS


TT
B
S
TT

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   550.........560.........570.........580.........590.........600.........610.........620.........
 
   578.580.........590 .........600.........610..... ....620.........630.........640
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Query Sequence  DLLAKKPELRGKT. . LYEVLYATPEVSKFPVSELAEDQLN. . . . . . . . . . . . . . . DESRELGFYLQKGLFEEYAWFGRGH
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Template Sequence  PVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARR
Template Known Secondary structure  S
GGGGB
TTS
B

BBSS
TT
TT
B
S
GGG

TTS
B

SSGGGTTSTTGGG
B
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   630.........640.........650.........660.........670.........680.........690.........700.........
 
   641.... ....650.........660 .........670.........680.... ...
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Query Sequence  GHDLA. . . PFDDYHKARGLRWPV. . . . . . . . . . . . . . . . . . . . . . . . . . VNGKETQWRYSEGNDPYVKAGEGY. . . . KFY
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Template Sequence  DKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFI
Template Known Secondary structure 




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
STTTTS

SS
S

TT
TTT


S
T
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   710.........720.........730.........740.........750.........760.........770.........780.........
 
   688.690.........700...
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Query Sequence  GKPDGKAVIFALPFEP
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Template Conservation                 
Template Sequence  MKPEGYAYLYGPGRED
Template Known Secondary structure  TSSSS
B
SS
TTSTT
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   790.........800.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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