Job Description P33937 Confidence 74.77% Date Thu Jan 5 11:52:56 GMT 2012 Rank 100 Aligned Residues 206 % Identity 9% Template c3fj1A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution Resolution 1.75 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		T	P	I	T	W	D	Q	A	F	D	V	M	E	E	K	F	K	T	A	L	K	.	.	.	E	K	G	P	E	S	I	G	M	F	G	S	G	Q	W	T	I	W	E	G	Y	A	A	S	K	L	F	K	A	G	F	R	S	N	N	I	D	P	N	A	R	H	C	M	A	S	A	V	V	G	F	M	R	T	F	G
Query Conservation																							.	.	.
Alig confidence																							.	.	.														.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	E	A	V	Q	R	L	L	D	H	G	A	Q	D	V	A	R	V	A	A	V	L	R	L	R	D	P	S	F	V	A	T	V	A	R	G	.	S	S	D	H	V	C	T	Y	L	S	Y	A	A	E	L	L	L	G	L	P	V	A	S	L	G	P	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																														S								T	.																										T			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																				.																							.	.	.	.	.	.	.
Query SS confidence																																																				.																							.	.	.	.	.	.	.
Query Sequence		M	D	E	P	M	G	C	Y	D	D	I	E	Q	A	D	A	F	V	L	W	G	A	N	M	A	E	M	H	P	I	L	W	S	R	I	T	N	R	R	L	S	N	Q	N	V	T	V	A	V	L	.	S	T	Y	Q	H	R	S	F	E	L	A	D	N	G	I	I	F	T	P	Q	S	D	.	.	.	.	.	.	.
Query Conservation																																																				.																							.	.	.	.	.	.	.
Alig confidence		.	.																																		.	.	.	.												.																							.	.	.	.	.	.	.
Template Conservation		.	.																																		.	.	.	.
Template Sequence		.	.	A	S	V	Y	D	A	R	L	R	L	D	R	A	L	C	L	A	V	S	Q	S	G	K	S	P	D	I	V	A	X	T	R	N	.	.	.	.	A	G	R	D	G	A	L	C	V	A	L	T	N	D	A	A	S	P	L	A	G	V	S	A	H	T	I	D	I	H	A	G	P	E	L	S	V	A	A	T	K
Template Known Secondary structure		.	.			T	T							T	T								S	S	S												.	.	.	.				T	T								S		T	T	S					T	S	S												S	T	T
Template Predicted Secondary structure		.	.																																		.	.	.	.
Template SS confidence
				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	I	L	N	Y	I	A	N	Y	I	I	Q	N	N	A	I	N	Q	D	F	F	S	K	H	V	N	L	R	K	G	A	T	D	I	G	Y	G	L	R	P	T	H	P	L	E	K	A	A	K	N	P	G	S	D	A	S	E	P	M	S	F	E	D	Y	K	A	F	V	A	E	Y	T	L	E	K	T	A	E	M
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		T	F	V	T	S	A	V	A	G	L	X	L	L	A	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	D	D	G	L	R	A	A	L	G	N	L	.	P	E	T	L	A	A	A
Template Known Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T										T		.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																																												170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	P	K	D	Q	L	E	Q	L	A	Q	L	Y	A	D	P	N	K	K	V	I	S	Y	W	T	M	G	F	N	Q	H	T	R	G	V	W	A	N	N	L	V	Y	N	L	H	L	L	T	G
Query Conservation
Alig confidence								.	.	.																			.	.	.	.	.	.
Template Conservation								.	.	.																			.	.	.	.	.	.
Template Sequence		S	R	I	D	W	P	.	.	.	E	X	R	V	A	I	G	A	R	P	S	L	F	T	L	G	R	G	.	.	.	.	.	.	T	S	L	A	V	S	N	E	A	A	L	K	F	K	E	T	C	Q
Template Known Secondary structure			T					.	.	.									S									G	.	.	.	.	.	.	G	G
Template Predicted Secondary structure								.	.	.																			.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions