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Job DescriptionP33937
Confidence100.00%DateThu Jan 5 11:52:56 GMT 2012
Rank11Aligned Residues707
% Identity17%Templatec1tmoA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100..... ...
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Query Sequence  EAIKWDKAPCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMK. . . . . . . . NGK
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Template Sequence  NEDEWLTTGSHF. . . . GAFKMKRKNGVIAEVKPFDLDKYP. . . . TDMINGIRGMVYNPSRVRYPMVRLDFLLKGHKSNTH
Template Known Secondary structure 




TT....TT
TT
SS
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GGGGTS
TTB

S
GGGS
GG
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   5....10...... ...20.........30.........40 .........50.........60.........70......
 
   109110.........120.........130.........140.........150.........160.........170. ........180......
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Query Sequence  YDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNN. . IDPNARHCMASAVVG
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Template Sequence  QRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVGMHGNYVKKIGDYSTGAGQTI
Template Known Secondary structure  GTTS


T
GGG







S
TTT
TT


B

SSSTT
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   187..190...... ...200.........210.........220.... .....230.........240.........250..
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Query Sequence  FMRTFGMDEP. . . . MGCYDDIEQADAFVLWGANMAEMHPILW. . . . . . . . . . SRITNRRLSNQNVTVAVLSTYQHRSFEL
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Template Sequence  LPYVLGSTEVYAQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAY
Template Known Secondary structure  TSS

TTS




SS

TS

SSB


TTSS
SS

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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   253......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  . ADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKA
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Template Sequence  LGCEQLYVNPQTDVTLMLAIAHEMISKKLYDDKFIQGYS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LGFEEFVP
Template Known Secondary structure  T



TT
TT
S
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   237..240.........250.........260.........270..... ....280...
 
   332.. .....340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  FVA. . . . . . EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPF
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Template Sequence  YVMGTKDGVAKTPEWAAPICGVEAHVIRDLAKTLVKGR. . TQFMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGIS
Template Known Secondary structure  TTTTS



T

S
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SGGGSSTTTT
TTSTT
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   284.....290.........300.........310.........320. ........330.........340.........350.........360.
 
   406...410.........420.........430.........440.........450....... ..460.........470.........
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Query Sequence  SLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKI. . . . . . GLHAVAQDRALKDGKLNVYWTM
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Template Conservation             .                                  
                          

 
   
Template Sequence  YGHHYSSIGVP. SSGAAAPGAFPRNLDENQKPLFDSSDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPDIKMMIFS
Template Known Secondary structure  S
TTSTTTTS
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SS

TT


SS




TTS
SGGGSTT

SSS




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   362.......370.. .......380.........390.........400.........410.........420.........430.........440
 
   480.........490.........500.........510.........520.........530....... ..540.........550......
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Query Sequence  CTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGN. . . AERRTQFWRQQVQAPGEAK
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Template Sequence  GNNPWNHHQDRNRMK. . QAFHKLECVVTVDVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSL
Template Known Secondary structure  S

SS
..TT
SSB

T
SB

GGGS

TTT




S


TT
B
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   441........450..... ....460.........470.........480.........490.........500.........510........
 
   557..560.........570.........580.........590.........600.........610.........620.........630......
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Query Sequence  SDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWF
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Template Sequence  SDFEIFTRFAAVLGKEKEYTRNMGEMEWLETLYNECKAANAGKF. . . . . . . . . . . . . . . . . . . . . . . . . EMPDFATFWKQ
Template Known Secondary structure 
TT
TT

TTT
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   519520.........530.........540.........550.........560.. .......570...
 
   637..640.........650.. .......660.........670.........680.........690.........700.........710..
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Query Sequence  GRGHGHDLAPFDDYHK. . . . ARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEY
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Template Sequence  GYVHFGDGEVWTRHADFRNDPEINPLGTPSGLIEIFSRKIDQ. . . . . . . . . . FGYDDCKGHPTWMEKTERSHGGPGSDKH
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TT
TTTS

SSSSSSSS
T..........T

TTS
SS





SS
SSSSTTTTT
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   574.....580.........590.........600.........610..... ....620.........630.........640...
 
   713......720.........730.........740 .........750.........760.........770.........780.........
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Query Sequence  DLWLSTGRVLEHWHTGSMTRRVPELHRA. . . FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGL
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Template Sequence  PIWLQSCHPDKRLH. . SQMCESREYRETYAVNGREPVYISPVDAKARGIKDGDIVRVFNDRGQLLAGAVVSDNFPK. . GI
Template Known Secondary structure 




SSSBT..TBTTT
TTT
BTTB

TT

TT

SS

TTS
T..T
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   644.....650....... ..660.........670.........680.........690.........700.........710....... ..
 
   790....... ..800........ .810.........820........
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Query Sequence  VYMPFFDA. . . . . . . . . . . . . . . . . . . . . AQLVNKLTLDA. TDPLSKETDFKKCAVKLEKV
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Template Sequence  VRIHEGAWYGPVGKDGSTEGGAEVGALCSYGDPNTLTLDIGTSKLAQACSAYTCLVEFEKY
Template Known Secondary structure 

TT




TTS
SGGGGSTT
SS

GGGS



BS
TTT

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TT


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   720.........730.........740.........750.........760.........770.........780
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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