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Job DescriptionP33937
Confidence100.00%DateThu Jan 5 11:52:56 GMT 2012
Rank4Aligned Residues786
% Identity22%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50......... 60.........70.........80.........90.........100.......
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Query Sequence  RAVVGQQEAIKWDKAPCRFCGTGCGVLVGT. . QQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNG
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Template Sequence  ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAP. .
Template Known Secondary structure 




TTTTS
SSBTT


TTT


TT
TTTTT


TS
TTS
SS

T..
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   1........10.........20.........30.........40.........50.........60.........70........
 
   108.110.........120.........130.........140.. .......150.........160.........170.....
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Query Sequence  KYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPES. . . . . . . . . . . . IGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPN
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Template Sequence  . . . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRS. LGLFYIEHQ
Template Known Secondary structure  ...T
SS



TTS

S

TTS
.TTB


G
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   7980.........90.........100.........110.........120.........130.........140..... ....150....
 
   176...180.........190.........200.........210.........220.........230.........240.........250.....
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Query Sequence  ARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADN
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Template Sequence  AR. IHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAK. . DKGATLIHVDPRYTRTSTKCDL
Template Known Secondary structure  GG.

S

S
SS
TGGGGG
SS

STT..TT

SS

TTGGG
S
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   155. ...160.........170.........180.........190.........200......... 210.........220.........230.
 
   256...260.........270.........280.........290.........300..... ....310......
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Query Sequence  GIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRP. . . . . . . . . . . . . . . . . . . THPLEKAAKNP
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Template Sequence  YAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRD
Template Known Secondary structure 


TT
TT
S
BGGGBBB
TT

TTTTTTTT
GGGG
B
B
TTS
B
B
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   233......240.........250.........260.........270.........280.........290.........300.........310..
 
   317..320.........330.........340.........350.........360... ......370.........380.........390...
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Query Sequence  GSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADPN. . . KKVISYWTMGFNQHTRGVWANNLVYNLHLL
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Template Sequence  ETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLL
Template Known Secondary structure  TTS
STTBTT




GGGSTT





SS
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   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   394.....400.........410.........420.........430.........440.........450
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Query Sequence  TGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LGNIGVAGGGVNALRGEANVQGS. TDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIK
Template Known Secondary structure  TT
SSSTT
S

SBTT.TT
BTTTTT

BTT

S





TT


GGGG
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   393......400.........410..... ....420.........430.........440.........450.........460.........470.
 
   451........460.........470.........480.........490.........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . . GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVS
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Template Sequence  SMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTR. . EALTKLDWMVNVNIFDNET
Template Known Secondary structure 
TTS
S

B
TT


STT


S

SBS..TT
SSS

TT
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   472.......480.........490.........500.........510.........520.........530 .........540.........
 
   516... 520.........530.........540.........550.........560.........570.........580.
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Query Sequence  ALAA. . . . . . . . . . . . . DLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLA.
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Template Sequence  GSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAA
Template Known Secondary structure  TTGGGSTT

GGG


B

GGG


TT


SS


TT
B
S
TT

Template Predicted Secondary structure 















































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   550.........560.........570.........580.........590.........600.........610.........620.........
 
   582.......590.........600.........610.........620.........630.
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Query Sequence  . . . . . . KKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFE. . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ......                                                  ........................
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Template Conservation                                                          
                       
Template Sequence  PVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARR
Template Known Secondary structure  S
GGGGB
TTS
B

BBSS
TT
TT
B
S
GGG

TTS
B

SSGGGTTSTTGGG
B
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   630.........640.........650.........660.........670.........680.........690.........700.........
 
   632.......640.........650........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EYAWFGRGHGHDLAPFDDYHKARGLRW
Query Conservation  .....................................................                           
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Template Conservation                       
                                                          
Template Sequence  DKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFI
Template Known Secondary structure 




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
STTTTS

SS
S

TT
TTT


S
T
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   710.........720.........730.........740.........750.........760.........770.........780.........
 
   659660.........670.........680.. .......690.........700.........710.........720.........730...
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Query Sequence  PVVNGKETQWRYSEGNDPYVKAGE. . . . . GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRR
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Template Conservation      
              
    
                                 

  
 
 
     

   
 
Template Sequence  MKPEGYAYLYGPGREDGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRN
Template Known Secondary structure  TSSSS
B
SS
TTSTT
SS






SSS



SS
S

S
TT

SS

SS




TTS


TT

TTST
Template Predicted Secondary structure 




































































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   790.........800.........810.........820.........830.........840.........850.........860.........
 
   734.....740.........750.........760.........770.........780....... ..790....... ..800
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Query Sequence  VPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQ. . . . . . GLVYMPFFDA. . . . . . . AQL
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Template Sequence  TPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDA
Template Known Secondary structure  SS
S

T

TT
TT
TT


TT
S


TTSSTTS


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   870.........880.........890.........900.........910.........920.........930.........940.........
 
   801........810.........820.......
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Query Sequence  VNKLTLDATDPLSKETDFKKCAVKLEK
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Template Conservation   
 

    

 

    
   
 
 
Template Sequence  ANILTPSVGNPNTGIPETKAFMVNVTK
Template Known Secondary structure  GGGS

BSSS
SSBSB

S
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   950.........960.........970......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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