Job Description P76555 Confidence 98.96% Date Thu Jan 5 12:24:33 GMT 2012 Rank 36 Aligned Residues 149 % Identity 15% Template c1y9qA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae Resolution 1.90 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	A	D	K	T	E	S	Q	R	I	R	E	T	I	I	A	Q	L	P	E	G	Q	F	T	E	S	L	V	A	Q	L	M	E	K	V	M	K	E	K	Q	S	L	E	Q	G	A	M	Q	P	S	F	K	S	V	T	G	K	G	G	I	K	V	I	D	G	S	S	V	K	F	G	R	F	D	G	A	E	P	H
Query Conservation
Alig confidence																														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	D	A	T	A	Q	L	T	G	V	S	K	A	X	L	G	Q	I	E	R	G	E	S	S	P	T	I	.	.	.	.	.	A	T	L	W	K	I	A	S	G	L	E	A	S	F	S	A	F	F	A	N	D	P	Q	L	L	S	S	E	R	S	F	P	D	D	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure											S	S										T	T		S					.	.	.	.	.											T			S	G	G	G	G	T	T	S	T								B		T	T		.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																														.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.													.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.																																																	.
Query SS confidence																													.	.	.	.																																																	.
Query Sequence		C	V	G	L	T	D	L	V	T	G	D	D	G	S	S	M	A	A	G	F	M	Q	W	E	N	A	F	.	.	.	.	F	P	W	T	L	N	Y	D	E	I	D	M	V	L	E	G	E	L	H	V	R	H	E	G	Q	T	M	I	A	K	A	G	D	V	M	F	I	P	K	G	S	S	I	E	F	G	T	T	.
Query Conservation																													.	.	.	.																																																	.
Alig confidence																													.	.	.	.																																																	.
Template Conservation
Template Sequence		N	X	K	I	H	T	L	F	P	Y	A	A	D	T	G	L	E	I	F	E	I	T	L	L	D	H	H	Q	Q	X	S	S	P	H	A	L	G	V	I	E	Y	I	H	V	L	E	G	I	X	K	V	F	F	D	E	Q	W	H	E	L	Q	Q	G	E	H	I	R	F	F	S	D	Q	P	H	G	Y	A	A	V	T
Template Known Secondary structure		T											T	T	T	T										T	T									S	T	T										S							T	T							T	T								S	S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
			217	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	S	S	V	K	F	L	Y	V	A	W	P
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		E	K	A	V	F	Q	N	I	V	A	Y	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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