Job Description P76773 Confidence 38.34% Date Thu Jan 5 12:25:21 GMT 2012 Rank 39 Aligned Residues 146 % Identity 18% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	K	P	T	D	K	L	T	I	Q	P	G	G	L	I	N	D	K	S	I	G	S	G	G	A	V	Y	L	D	V	N	Y	K	F	V	P	W	F	N	L	T	V	R	N	R	Y	N	H	N	N	Y	S	S	T	D	L	S	G	E	L	D	N	N	D	T	Y	E	I	G	T	Y	W	N	F	K	I	T	D	K
Query Conservation
Alig confidence																.																																																.	.	.	.
Template Conservation																.																																																.	.	.	.
Template Sequence		R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	.	A	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	.	.	.	.	N	T	T	W	S	L	A	A	A	Y	T	L	D	A
Template Known Secondary structure					S	S	S	S								.				T	T	T																T	T																T	T		S	S					.	.	.	.													T	T
Template Predicted Secondary structure																.																																																.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	Y	T	F	E	P	H	Y	F	M	R	V	N	D	F	N	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A	S	Y	G	V	P	G	L	T	F	X	V	R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N
Template Known Secondary structure													S	S	S											S	S	T	T			S	S						T	T												T	T	S	S	S		T	T																T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
										179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	N	G	K	D	H	H	W	E	I	T	N	T	F	R	Y	R	I	N	.	.	.	.	E	H	W	L	P	Y	F	E	L	R	W	L	D	R	N	V	E	P	Y	H	R	E	Q	N	Q	I	R	I	G	T	K	Y	F	F
Query Conservation		.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A	D	Q	G	E	G	D	Q	N	E	F	R	L	I	V	D	Y	P	L
Template Known Secondary structure		T	T	T	S	S	S				S	S																S	S	T	T	T	T														T	T	T	S	S		S	B
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions