Job Description P76773 Confidence 97.81% Date Thu Jan 5 12:25:21 GMT 2012 Rank 3 Aligned Residues 144 % Identity 13% Template c2f1tB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																																																					.	.
Query SS confidence																						.	.	.	.	.	.																																																					.	.
Query Sequence		K	L	T	I	Q	P	G	G	L	I	N	D	K	S	I	G	S	G	G	A	.	.	.	.	.	.	V	Y	L	D	V	N	Y	K	F	V	P	W	F	N	L	T	V	R	N	R	Y	N	H	N	N	Y	S	S	T	D	L	S	G	E	L	D	N	N	D	T	Y	E	I	G	T	Y	W	N	F	K	I	T	.	.
Query Conservation																						.	.	.	.	.	.																																																					.	.
Alig confidence																						.	.	.	.	.	.																																																					.	.
Template Conservation
Template Sequence		E	F	F	M	R	A	G	S	A	T	V	R	P	T	E	G	G	G	F	S	V	T	N	N	T	Q	L	G	L	T	F	T	Y	M	A	T	D	N	I	G	V	E	L	L	A	A	T	P	F	R	H	K	I	G	T	R	A	T	G	D	I	A	T	V	H	H	L	P	P	T	L	M	A	Q	W	Y	F	G	D	A
Template Known Secondary structure																																						T	T									S									T	T	T																				S		T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
									158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.														210
Predicted Secondary structure		.	.	.	.	.	.	.																			.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	K	F	S	Y	T	F	E	P	H	Y	F	M	R	V	N	D	F	.	.	.	.	.	.	.	N	S	S	N	G	K	D	H	H	W	E	I	T	N	T	F	R	Y	R	I	N	E	H	W	L	P	Y	F	E	L	R	W	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation		.	.	.	.	.	.	.																			.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	K	F	R	P	Y	V	G	A	G	I	N	Y	T	T	F	F	D	N	G	F	N	D	H	G	K	E	A	G	L	S	D	L	S	L	K	D	S	W	G	A	A	G	Q	V	G	V	D	Y	L	I	N	R	D	W	L	V	N	M	S	V	W	Y	M	D	I	D	T	T	A	N	Y	K	L	G	G	A	Q	Q
Template Known Secondary structure		T		S																										T	T																							S	S	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	E	P	Y	H	R	E	Q	N	Q	I	R	I	G	T	K	Y	F	F
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		H	D	S	V	R	L	D	.	P	W	V	F	M	F	S	A	G	Y	R	F
Template Known Secondary structure									.
Template Predicted Secondary structure									.
Template SS confidence
		173	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions