Return to main results Retrieve Phyre Job Id

Job DescriptionP76773
Confidence85.58%DateThu Jan 5 12:25:21 GMT 2012
Rank23Aligned Residues121
% Identity19%Templatec2ervA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.........70.........80.........90.........
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  AGAYVENREAYNLASDQGEVMLRVGYNFDMGAGIMLTNTYNFQREDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKS
Query Conservation 
 
 

 
 

   
     



 
 
 

 
   
                
    
   
  
   
 

       
Alig confidence 






.....















































...
















Template Conservation         .....
 
        
                 
    
     
       ...    

  

 
     
Template Sequence  ADVSAAV. . . . . GATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGA. . . GKHSLSFAPVFVYEFAG
Template Known Secondary structure 
.....
TTS




TT


SS
S...S

Template Predicted Secondary structure 

.....




















...




Template SS confidence 















































































   1...... ..10.........20.........30.........40.........50..... ....60.........70..
 
   100 .........110.........120.........130.........140........
Predicted Secondary structure 
...........................






















Query SS confidence 
. . . . . . . . . . . . . . . . . . . . . . . . . . .















































Query Sequence  I. . . . . . . . . . . . . . . . . . . . . . . . . . . GSGGAVYLDVNYKFVPWFNLTVRNRYNHNNYSSTDLSGELDNNDTYEI
Query Conservation   ...........................   


 

  
 

       




          
        
 
Alig confidence 
...........................















































Template Conservation       
 
 


    
        

  
 
   

 
        
  
  
 




   


 
   
 
  
Template Sequence  DSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKI
Template Known Secondary structure  SSSSSTT
S
STTS

TTSSTT


Template Predicted Secondary structure 































Template SS confidence 











































































   73......80.........90.........100.........110.........120.........130.........140........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions