Phyre 2 alignment of P0A8M3 with d1hc7a2

Job Description P0A8M3
Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012

Rank 35 Aligned Residues 256

% Identity 20% Template d1hc7a2

SCOP info Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Resolution 2.43

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	224	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	A	D	K	K	A	L	N	A	.	Y	L	Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V
Query Conservation									.
Alig confidence									.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	Q	S	Q	D	F	S	E	W	Y	L	E	V	I	Q	K	A	E	L	A	D	Y	G	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	T	I	V	V	R	P	Y	G	Y	A	I	W	E	N	I	Q	Q	V	L	D	R	M	F	K	E	T	G	H	Q	N	A	Y	F	P	L	F	I	P	M	S
Template Known Secondary structure																	T	T	S					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T																										T	T								S				S	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.														.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.

	303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D
Query Conservation
Alig confidence																			.	.	.																																															.	.
Template Conservation																			.	.	.																																															.	.
Template Sequence	F	L	F	S	P	E	L	A	V	V	T	H	A	G	G	E	E	L	.	.	.	E	E	P	L	A	V	R	P	T	S	E	T	V	I	G	Y	M	W	S	K	W	I	R	S	W	R	D	L	P	Q	L	L	N	Q	W	G	N	V	V	R	W	E	M	R	T	R	.	.	P	F	L	R	T	S	E	F	L	W	Q
Template Known Secondary structure	T				T	T								S	S	S			.	.	.								S		S														B	G	G	G																S	S		B	.	.	T	T	T	B		S
Template Predicted Secondary structure																			.	.	.																																															.	.
Template SS confidence
	76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150

	383	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence	D	A	H	.	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F
Query Conservation				.
Alig confidence				.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	G	H	T	A	H	A	T	R	E	E	A	E	E	E	V	R	R	M	L	S	I	Y	A	R	L	A	R	E	Y	A	A	I	P	V	I	E	G	L	K	T	E	K	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	G	A	V
Template Known Secondary structure							S	S																																		T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																															.	.	.	.	.

	462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	.	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F
Query Conservation																							.
Alig confidence												.	.										.																							.	.	.
Template Conservation												.	.																																	.	.	.
Template Sequence	Y	T	T	T	I	E	A	L	M	K	D	.	.	G	K	A	L	Q	A	G	T	S	H	Y	L	G	E	N	F	A	R	A	F	D	I	K	F	Q	D	R	D	L	Q	V	K	.	.	.	Y	V	H	T	T	S	W	G	L	S	W	R	F	I	G	A	I	I	M	T	H	G	D	D
Template Known Secondary structure										T	T	.	.	S													T						T	T						T	T	S				.	.	.											T
Template Predicted Secondary structure												.	.																																	.	.	.
Template SS confidence
	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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