Job Description P0A8M3 Confidence 99.96% Date Thu Jan 5 11:08:11 GMT 2012 Rank 51 Aligned Residues 238 % Identity 15% Template c3racA_ PDB info PDB header:ligase Chain: A: PDB Molecule:histidine-trna ligase; PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446. Resolution 2.30 Å

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		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	.	N	R	E	Y	C	I	K	P	M	N	C
Query Conservation																																																																						.
Alig confidence																																																											.											.
Template Conservation																																																											.
Template Sequence		F	A	D	R	P	P	G	M	Q	D	G	Y	P	D	F	A	K	R	R	R	A	V	E	T	R	L	L	S	F	V	E	D	A	G	Y	E	P	V	T	S	G	L	F	E	Y	V	D	T	L	L	R	A	R	S	P	E	S	.	S	R	D	W	I	R	L	F	D	G	G	G	D	A	V	A	L	R	P	E	M	T
Template Known Secondary structure							T	T						T	T																			T	T								S									T	T	S		T	T	S	.						B					S	S	S						S	S	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E
Query Conservation
Alig confidence												.																						.	.	.	.	.	.	.	.	.	.																					.
Template Conservation												.																						.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		P	S	I	A	R	M	A	A	P	R	.	V	A	A	G	R	T	P	I	R	W	C	Y	C	E	R	V	Y	R	R	T	A	.	.	.	.	.	.	.	.	.	.	A	E	S	T	Q	V	G	I	E	R	I	G	E	E	A	S	V	D	V	D	.	M	D	V	L	R	L	L	H	E	A	S	A	A	A	G	V	R
Template Known Secondary structure												.			T	T																		.	.	.	.	.	.	.	.	.	.												S	S								.															T
Template Predicted Secondary structure												.																						.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	V	K	L	S	T	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	H	R	I	V	V	S	H	A	R	L	V	P	R	L	L	D	A	L	G	I	S	A	S	L	S	R	A	F	L	A	C	L	T	S	G	N	Y	V	Q	F	R	E	L	W	Q	L	H	A	A	K	D	V	D	L	L	A	N	L	L	T	W	S	P	A	E	R	D	A	A	K	R	S	R	E	A	S	D	R	E
Template Known Secondary structure		S								T	T									T	T																T														S			S									B				S	S		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
										425	.	.	.	.	430	.	.	.	.	.	.	.	.			.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.															.	.
Query SS confidence		.	.	.	.	.	.	.	.															.	.
Query Sequence		.	.	.	.	.	.	.	.	E	K	R	I	G	S	D	E	M	W	D	R	A	E	.	.	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S
Query Conservation		.	.	.	.	.	.	.	.															.	.
Alig confidence		.	.	.	.	.	.	.	.															.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	A	L	L	R	D	A	V	D	P	R	A	A	A	D	V	R	D	A	W	R	Y	L	C	R	L	A	E	A	L	H	D	S	G	L	A	S	D	V	V	T	F	D	L	A	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	L	D	Y	Y	T	G	L	V	F	E
Template Known Secondary structure							T	T		S																										T			T	T	T					T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S		T	T			S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																					.	.	.	.	310	.	.	.	.	.	.	.
		495	.														.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	G	E	D	N	E	R	K	V	P	.	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.												.								.	.
Template Conservation																																				.	.
Template Sequence		M	F	A	P	G	V	G	A	P	I	A	Q	G	G	R	Y	D	E	L	L	A	Q	F	G	A	G	A	P	A	V	G	F	A	F	.	.	E	V	E	R	V	M	A	V	L	E	A	Q
Template Known Secondary structure					T	T		S	S		S							T	T	T	T	G	G	G	T											.	.
Template Predicted Secondary structure																																				.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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