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Job DescriptionP0A8M3
Confidence100.00%DateThu Jan 5 11:08:11 GMT 2012
Rank22Aligned Residues361
% Identity14%Templatec3netB_
PDB info PDB header:ligaseChain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from nostoc sp. pcc 7120
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   258.260.........270.........280.........290.........300.........310.........320.........330.......
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Query Sequence  EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGH
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Template Sequence  STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQD. . . NIIYGLEPILEARALKFDQTVPL
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TT




TT




STTT


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B

B







S
S
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   10.........20.........30.........40.........50.........60... ......70.........80......
 
   338.340.........350.........360.........370.........380.........390.........400.........410.......
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Query Sequence  VQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIV
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Template Sequence  AAYIARHL. NDLTFPFARYQXDVVFRGE. . . . . . . . . RFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIFEAVNIGDFV
Template Known Secondary structure  G.GGS
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B
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TT


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   104.....110. ........120.........130 .........140.........150.........160.........170...
 
   418.420.... .....430.........440.........450.........
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Query Sequence  VKLSTRP. . EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IRINNRKVLTGFFQSLNISETQIKSCISIIDNLEVKLELEKETQKIIDFVKIDGSVDDVLDKLKHLSQTLSEQFNLGVSE
Template Known Secondary structure  TTTT

SSTTTT



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TTT





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   179180.........190.........200.........210.........220.........230.........240.........250........
 
   460.........470.........480... ......490.........500.........510.........520......
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Query Sequence  . . . . . . . AFYGPKIEFTLYDCLDRAWQCGTV. . . . . . QLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILT
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Template Sequence  LETVITGVRNLGVPDKRFCIDLAIAYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKXPGVGISIGLTRLISRLL
Template Known Secondary structure  TT

GGG
TT


TT
GGG

SSSSSS
TTTTS


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   273......280.........290.........300.........310.........320.........330.........340.........350..
 
   527..530.........540.........550.........560.........570.........580.........590.........600......
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Query Sequence  EEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKV
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Template Sequence  KA. GILNTLPPTPAQVVVVNXQDELXPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKS
Template Known Secondary structure  T.T
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S
GGGTT



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TT
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   357. .360.........370.........380.........390.........400.........410.........420.........430.....
 
   607..610.........620.........630..
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Query Sequence  AVRTRRGKDLGSMDVNEVIEKLQQEI
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Template Sequence  SLKDLQSGEQVEVALADLAEEIKRRL
Template Known Secondary structure  TTT

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   436...440.........450.........460.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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