Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 22 Aligned Residues 361 % Identity 14% Template c3netB_ PDB info PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from nostoc sp. pcc 7120 Resolution 2.70 Å

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		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H
Query Conservation
Alig confidence																																																								.	.	.
Template Conservation																																																								.	.	.
Template Sequence		S	T	P	S	G	F	P	E	F	L	P	S	E	K	R	L	E	L	Y	L	L	D	T	I	R	R	V	Y	E	S	Y	G	F	T	P	I	E	T	P	A	V	E	R	L	E	V	L	Q	A	K	G	N	Q	D	.	.	.	N	I	I	Y	G	L	E	P	I	L	E	A	R	A	L	K	F	D	Q	T	V	P	L
Template Known Secondary structure					T	T																										T	T								S									T	T	T				.	.	.		B			B												S		S
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V
Query Conservation
Alig confidence										.																				.	.	.	.	.	.	.	.	.
Template Conservation										.																				.	.	.	.	.	.	.	.	.
Template Sequence		A	A	Y	I	A	R	H	L	.	N	D	L	T	F	P	F	A	R	Y	Q	X	D	V	V	F	R	G	E	.	.	.	.	.	.	.	.	.	R	F	R	Q	F	R	Q	C	D	I	D	V	V	G	R	E	K	L	S	L	L	Y	D	A	Q	X	P	A	I	I	T	E	I	F	E	A	V	N	I	G	D	F	V
Template Known Secondary structure									G	.	G	G	S		S	S												B		.	.	.	.	.	.	.	.	.			S												S	S				T																		T
Template Predicted Secondary structure										.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130										.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		418	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	L	S	T	R	P	.	.	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	I	N	N	R	K	V	L	T	G	F	F	Q	S	L	N	I	S	E	T	Q	I	K	S	C	I	S	I	I	D	N	L	E	V	K	L	E	L	E	K	E	T	Q	K	I	I	D	F	V	K	I	D	G	S	V	D	D	V	L	D	K	L	K	H	L	S	Q	T	L	S	E	Q	F	N	L	G	V	S	E
Template Known Secondary structure															T	T	T	T										S	S	T	T	T	T					S	T	T	T	T				T	T					T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
									460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.							.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																									.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																									.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	.	.	.	.	.	.	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T
Query Conservation		.	.	.	.	.	.	.																									.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	T	V	I	T	G	V	R	N	L	G	V	P	D	K	R	F	C	I	D	L	A	I	A	Y	Y	T	G	T	V	Y	E	T	T	L	I	G	H	E	A	L	G	S	I	C	S	G	G	R	Y	E	E	L	V	G	T	F	I	G	E	K	X	P	G	V	G	I	S	I	G	L	T	R	L	I	S	R	L	L
Template Known Secondary structure												T	T			G	G	G					T	T														T	T		G	G	G			S	S						S	S	S	S		T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		K	A	.	G	I	L	N	T	L	P	P	T	P	A	Q	V	V	V	V	N	X	Q	D	E	L	X	P	T	Y	L	K	V	S	Q	Q	L	R	Q	A	G	L	N	V	I	T	N	F	E	K	R	Q	L	G	K	Q	F	Q	A	A	D	K	Q	G	I	R	F	C	V	I	I	G	A	D	E	A	A	A	Q	K	S
Template Known Secondary structure			T	.	T		S					S										S		G	G	G														T	T								S														T	T														T	T
Template Predicted Secondary structure				.
Template SS confidence
		357	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	K	D	L	Q	S	G	E	Q	V	E	V	A	L	A	D	L	A	E	E	I	K	R	R	L
Template Known Secondary structure						T	T	T
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions