Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 18 Aligned Residues 358 % Identity 15% Template c3ikmC_ PDB info PDB header:transferase Chain: C: PDB Molecule:dna polymerase subunit gamma-2; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme Resolution 3.24 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	.	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N
Query Conservation																									.
Alig confidence													.	.											.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	E	I	C	Q	R	R	H	F	.	.	L	S	G	S	K	Q	Q	L	S	R	D	S	L	L	S	G	C	H	P	G	F	G	P	L	G	V	E	L	R	K	N	L	A	A	E	W	W	T	S	V	V	V	F	R	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	F	P	V	D	A	L	H	H
Template Known Secondary structure									G	G	G	S	.	.	S				S	T	T	T	T							T		S																									S	S	.	.	.	.	.	.	.	.	.	.	.	.			B							S
Template Predicted Secondary structure													.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.													.	.	.	.	.	.	.	130	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																									.	.
Query SS confidence																																	.																									.	.
Query Sequence		Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	.	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	.	.	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T
Query Conservation																																	.																									.	.
Alig confidence																																	.																									.	.
Template Conservation
Template Sequence		K	P	G	P	L	L	P	G	D	S	A	F	R	S	G	K	L	R	E	N	L	L	H	G	A	L	E	H	Y	V	N	C	L	D	L	V	N	K	R	L	P	Y	G	L	A	Q	I	G	V	C	F	H	P	V	F	D	T	K	Q	I	R	N	G	V	K	S	I	G	E	K	T	E	A	S	L	V	W	F	T	P
Template Known Secondary structure						S	S	S	S				S	S				S		S																G	G	G	S						B																S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Sequence		P	R	T	S	N	Q	W	L	D	F	W	L	R	H	R	L	Q	W	W	R	K	F	A	M	S	P	S	N	F	S	S	S	D	C	Q	D	E	E	G	R	K	G	N	K	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	F	P	W	G	K	E	L	I	E	T	L	W	N	L	G	D	H	E	.	.
Template Known Secondary structure		T	T																						S	S	T	T	S									S	S	S								.	.	.	.	.	.	.	.	.	.	.	.				T	T												T	T	S	S	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290													.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.																		.	530	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	G	F
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.														.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		.	.	.	.	L	L	H	M	Y	P	G	N	V	S	K	L	H	G	R	D	G	.	.	.	.	.	.	.	.	.	.	.	R	K	N	V	V	P	C	V	L	S	V	N	G	.	.	D	L	D	R	G	M	L	A	Y	L	Y	D	S	F	Q	L	T	E	N	S	F	T	R	K	K	N	L	H	R	K	V	L	K
Template Known Secondary structure		.	.	.	.					S			S	S		S				B	S	S	.	.	.	.	.	.	.	.	.	.	.	S	S	B											.	.			S															S	T	T	T	S	S	S		S
Template Predicted Secondary structure		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
						311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.												.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.				.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.				.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																										.	.	.
Query SS confidence																		.	.	.																										.	.	.
Query Sequence		F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	.	.	.	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	.	.	.	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V
Query Conservation																		.	.	.																										.	.	.
Alig confidence																		.	.	.																										.	.	.
Template Conservation
Template Sequence		L	H	P	C	L	A	P	I	K	V	A	L	D	V	G	R	G	P	T	L	E	L	R	Q	V	C	Q	G	L	F	N	E	L	L	E	N	G	I	S	V	W	P	G	Y	L	E	T	M	Q	S	S	L	E	Q	L	Y	S	K	Y	D	E	M	S	I	L	F	T	V	L	V	T	E	T	T	L	E	N	G	L	I
Template Known Secondary structure				T	T	T	S	S									S	S	S						T	T												T			B							T	S	S	S											T	T	T									T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	R	S	R	D	T	T	M	K	E	M	M	H	I	S	K	L	K	D	F	L	I	K	Y	I	S	S	A	K
Template Known Secondary structure							T	T	T
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.