Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 10 Aligned Residues 363 % Identity 21% Template c3ialB_ PDB info PDB header:ligase Chain: B: PDB Molecule:prolyl-trna synthetase; PDBTitle: giardia lamblia prolyl-trna synthetase in complex with prolyl-2 adenylate Resolution 2.20 Å

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		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	.	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		F	D	A	I	M	D	A	A	E	L	V	D	R	R	Y	P	V	K	G	C	V	V	F	R	P	Y	G	F	F	M	E	N	A	I	M	R	L	C	E	E	E	Y	A	K	V	G	I	S	Q	I	L	F	P	T	V	I	P	E	S	F	L	K	K	E	S	D	H	I	K	G	F	E	A	E	C	F	W	V	E	K
Template Known Secondary structure									T	T				T	T	S	S	S	T	T																										T	T								S								T	S	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		323	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.																																																												.
Query SS confidence						.	.	.	.	.																																																												.
Query Sequence		E	N	R	E	.	.	.	.	.	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	.	I	F	C	T	E	E	Q	I	R	D	E
Query Conservation						.	.	.	.	.																																																												.
Alig confidence						.	.	.	.	.																																												.																.
Template Conservation																																																						.
Template Sequence		G	G	L	Q	P	L	E	E	R	L	A	L	R	P	T	S	E	T	A	I	Y	S	M	F	S	K	W	V	R	S	Y	K	D	L	P	L	K	I	H	Q	T	C	T	I	F	R	H	E	T	K	N	T	.	K	P	L	I	R	V	R	E	I	H	W	N	E	A	H	C	C	H	A	T	A	E	D	A	V	S	Q
Template Known Secondary structure			T	T											S	S	S													S	B	G	G	G														T	T			S		.	B	T	T	T	B		S												S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		L	S	D	Y	W	K	V	I	D	T	I	F	S	D	E	L	C	F	K	G	Q	K	L	R	R	V	C	W	D	R	F	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	Y	S	E	V	S	D	V	V	M	P	C	.	.	G	R
Template Known Secondary structure														T	T	T	T											G	G	G			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	T	.	.	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.																															.	.	.	.	.	.	250	.	.	.	.	.	.			.	.
		477	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure									.																																																		.	.	.	.																.	.	.	.
Query SS confidence									.																																																		.	.	.	.																.	.	.	.
Query Sequence		A	W	Q	C	G	T	V	.	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	.	.	.	.
Query Conservation									.																																																		.	.	.	.																.	.	.	.
Alig confidence									.																									.	.	.																							.	.	.	.																.	.	.	.
Template Conservation																																		.	.	.
Template Sequence		V	L	Q	T	A	G	I	H	N	L	G	Q	R	F	S	S	T	F	D	I	L	Y	A	N	K	A	N	E	S	V	H	P	.	.	.	Y	L	T	C	A	G	I	S	T	R	V	L	A	C	A	L	S	I	H	G	D	S	G	G	L	V	L	P	P	L	I	A	P	I	H	V	V	I	I	P	I	G	C	G	K
Template Known Secondary structure													T						T	T						T	T							.	.	.									T												B	T	T	B					G	G	G		S		S							S		S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
								548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.		.	.	.	.	.	.	570	.	.	.	.	.	.		.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.			.	.
Predicted Secondary structure		.	.	.	.	.	.																	.														.																																								.	.
Query SS confidence		.	.	.	.	.	.																	.														.																																								.	.
Query Sequence		.	.	.	.	.	.	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	.	N	A	G	I	R	V	K	A	D	L	R	N	E	.	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	.	.	L	G
Query Conservation		.	.	.	.	.	.																	.														.																																								.	.
Alig confidence		.	.	.	.	.	.																	.														.																																								.	.
Template Conservation
Template Sequence		K	N	N	Q	E	S	D	Q	Q	V	L	G	K	V	N	E	I	A	D	T	L	K	S	K	L	G	L	R	V	S	I	D	D	D	F	S	K	S	M	G	D	K	L	Y	Y	Y	E	L	K	G	V	P	L	R	I	E	V	G	Q	R	D	L	A	N	G	Q	C	I	V	V	P	R	D	V	G	K	D	Q	K	R
Template Known Secondary structure		T	T																						T	T										T	T	S												T	T		S												T	T							T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		618	.	620	.	.	.																							.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	M	D	V	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	E	K	L	Q	Q	E	I	R	S	R	S	L	K	Q	L	E	E
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	P	I	T	E	V	M	K	V	S	S	H	T	T	E	N	H	E	L	V	V	K	N	V	I	K	D	E	L	D	A	Y	K	A	R	L	K	E	K	A	F	A	F	H	N	S
Template Known Secondary structure																	T	T
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.