Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 23 Aligned Residues 347 % Identity 15% Template c3hriF_ PDB info PDB header:ligase Chain: F: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei Resolution 2.85 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G
Query Conservation
Alig confidence																																																								.												.	.
Template Conservation																																																								.												.	.
Template Sequence		T	E	P	V	Q	G	C	R	D	F	P	P	E	T	M	R	L	R	K	Y	L	F	D	V	F	H	S	T	A	R	K	F	G	F	E	E	Y	D	S	P	V	L	E	S	E	E	L	Y	I	R	K	A	G	E	.	E	I	T	E	Q	M	F	N	F	I	T	.	.	H	R	V	A	L	R	P	E	M	T	P	S
Template Known Secondary structure			S		S	T	T																										T	T								S													G	.	G	G	G	G	G	S						.	.							S		S
Template Predicted Secondary structure																																																								.												.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	.	.	E
Query Conservation																																																																															.	.
Alig confidence																.																				.	.	.	.																						.	.																	.	.
Template Conservation																.																				.	.	.	.																						.	.
Template Sequence		L	A	R	Q	L	L	A	K	G	R	S	L	L	L	.	P	A	K	W	Y	S	I	P	Q	C	W	R	Y	E	A	I	T	R	G	.	.	.	.	R	R	R	E	H	Y	Q	W	N	M	D	I	I	G	V	K	S	V	S	S	E	.	.	V	E	L	V	C	A	A	C	T	A	M	Q	S	L	G	L	S	S	K
Template Known Secondary structure										G	G	G	S		S	.	S															S	S	S	S	.	.	.	.			S											S			S	T				.	.														T	T			T	T
Template Predicted Secondary structure																.																				.	.	.	.																						.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		415	.	.	.	.	420	.	.	.	.											.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	V	K	L	S	T	R	P	.	.	.	.	.	.	.	.	.	.	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q
Query Conservation												.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation																																														.	.
Template Sequence		D	V	G	V	K	I	N	S	R	K	I	L	Q	T	V	V	E	D	K	F	A	P	V	C	V	I	L	K	T	I	D	E	I	A	Q	R	E	H	E	A	V	R	E	L	.	.	R	D	F	I	T	Q	I	E	A	Y	G	F	G	D	W	V	I	F	D	A	S	V	V	R	G	L	A	Y	Y	T	G	I	V	F
Template Known Secondary structure		T													T	T																				T										.	.											T		T	T	T					T	T			T	T	T	T	T			S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		485	.	.	.	.	490	.	.	.						.	.	.	.	.	.				500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.							.	.	.
Query SS confidence											.	.	.	.	.							.	.	.
Query Sequence		L	D	F	S	L	P	S	R	L	.	.	.	.	.	S	A	S	Y	V	G	.	.	.	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	Q	S	E	Y	V	N
Query Conservation											.	.	.	.	.							.	.	.
Alig confidence											.	.	.	.	.							.	.	.																.	.										.	.
Template Conservation																																								.	.										.	.
Template Sequence		E	G	F	D	R	D	G	N	F	R	A	L	C	G	G	G	R	Y	D	N	L	L	T	T	Y	G	S	P	T	A	V	P	C	V	G	F	G	F	.	.	G	D	C	V	I	V	E	L	L	.	.	N	E	K	K	L	L	P	E	L	H	H	V	V	D	D	L	V	I	P	F	D	E	T	M	R	P	H	A	L
Template Known Secondary structure						T	T	S		S			S							T	T					T	T		S	S										.	.		S	S							.	.				.										S						S	S	G	G	G
Template Predicted Secondary structure																																								.	.										.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N
Query Conservation
Alig confidence																																																									.	.	.
Template Conservation																																																									.	.	.
Template Sequence		S	I	L	R	R	L	R	D	A	G	R	S	A	D	I	V	F	D	K	K	K	V	V	Q	A	F	N	Y	A	D	R	I	G	A	L	R	A	V	L	V	A	P	D	E	W	A	R	G	E	V	R	V	K	M	L	.	.	.	R	G	I	V	L	P	V	D
Template Known Secondary structure										T	T								S													T	T	T		S												T	T								.	.	.
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.				.	.	.	.	.	460	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions