Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 38 Aligned Residues 262 % Identity 16% Template c3errB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase Resolution 2.27 Å

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		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	.	.	.	.	.	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K
Query Conservation																						.	.	.	.	.
Alig confidence																		.	.			.	.	.	.	.
Template Conservation																		.	.
Template Sequence		P	P	L	D	H	V	A	L	M	E	K	N	G	W	W	E	.	.	P	R	I	S	Q	V	S	G	S	R	S	Y	A	L	K	G	D	L	A	L	Y	E	L	A	L	L	R	F	A	M	D	F	M	A	R	R	G	F	L	P	M	T	L	P	S	Y	A	R	E	K	A	F	L	G	T	G	H	F	P	A	Y	R
Template Known Secondary structure														T		B		.	.	T	T							S	S				B																						T	T								S											T		T	T	T	T	G
Template Predicted Secondary structure																		.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																									.	.	.																						.
Query SS confidence																																																									.	.	.																						.
Query Sequence		D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	.	.	.	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	.
Query Conservation																																																									.	.	.																						.
Alig confidence								.	.																																																.	.	.																						.
Template Conservation								.	.
Template Sequence		D	Q	V	W	A	I	.	.	A	E	T	D	L	Y	L	T	G	T	A	E	V	V	L	N	A	L	H	S	G	E	I	L	P	Y	E	A	L	P	L	R	Y	A	G	Y	A	P	A	F	R	S	E	A	G	S	F	G	K	D	V	R	G	L	M	R	V	H	Q	F	H	K	V	E	Q	Y	V	L	T	E	A	S
Template Known Secondary structure		G	G					.	.	T	T	S	S					S	S	T								T	T	T					G	G	G		S															S			S	S	S		S	S	S	S	S		S													S
Template Predicted Secondary structure								.	.
Template SS confidence
		210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
			391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T
Query Conservation		.
Alig confidence		.																																	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		L	E	A	S	D	R	A	F	Q	E	L	L	E	N	A	E	E	I	L	R	L	L	E	L	P	Y	R	L	V	E	V	A	T	.	.	.	.	.	.	.	.	.	.	.	G	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	G	K	W	R	.	.	Q	V	D	I	E
Template Known Secondary structure																							T	T											.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		S		.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320												.	.	.																					.	.	.	.	.	.			330	.	.	.	.
		470		.	.	.	.	.	.	.	.	.	480	.	.	.	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.						.	.	.	.	.	.	.	540
Predicted Secondary structure			.															.	.																																																	.	.	.	.	.
Query SS confidence			.															.	.																																																	.	.	.	.	.
Query Sequence		L	.	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	.	.	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	.	F	P	T	W	L	A	P	V
Query Conservation			.															.	.																																																	.	.	.	.	.
Alig confidence			.															.	.				.																														.															.	.	.	.	.
Template Conservation																							.																														.
Template Sequence		V	Y	L	P	S	E	G	R	Y	R	E	T	H	S	C	S	A	L	L	D	W	.	Q	A	R	R	A	N	L	R	Y	R	D	P	E	G	R	V	R	Y	A	Y	T	L	N	N	T	A	L	A	T	.	P	R	I	L	A	M	L	L	E	N	H	Q	L	Q	D	G	R	V	R	V	P	Q	A	L	I	P	Y
Template Known Secondary structure					G	G	G	T												T	T		.						T						T	T	S																.	T											B		T	T	S						G	G	G
Template Predicted Secondary structure																							.																														.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions