Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 3 Aligned Residues 408 % Identity 30% Template c3a32A_ PDB info PDB header:ligase Chain: A: PDB Molecule:probable threonyl-trna synthetase 1; PDBTitle: crystal structure of putative threonyl-trna synthetase2 thrrs-1 from aeropyrum pernix Resolution 2.30 Å

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	A	L	N	A	Y	L	Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E
Query Conservation
Alig confidence							.																										.	.
Template Conservation							.																										.	.
Template Sequence		K	T	H	I	D	.	Y	A	Y	E	L	D	I	T	V	K	P	D	S	R	V	P	V	F	N	R	E	F	A	T	F	.	.	T	G	A	G	V	P	L	F	S	L	G	G	G	P	I	R	Y	A	L	A	E	V	L	A	K	F	H	A	R	R	G	Y	Y	V	V	E	T	P	I	I	A	S	T	E	L	F	K
Template Known Secondary structure							.					T	T	S	B			T	T	S	B		T	T	T		S	B	T				.	.			T	T				B		T	T																			T	T								S				T
Template Predicted Secondary structure							.																										.	.
Template SS confidence
		7	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	.	.	.	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		V	S	G	H	I	E	F	Y	R	N	N	M	Y	L	F	D	I	E	G	H	E	F	A	V	K	P	M	N	C	P	Y	H	I	L	L	F	L	N	E	V	A	K	H	R	S	K	L	P	L	P	F	K	V	F	E	F	G	R	V	H	R	Y	E	P	S	G	S	I	Y	G	L	L	R	V	R	G	F	T	Q	D
Template Known Secondary structure			T				T	T	G	G	G	G	S						T	T							S		S																G	G	G	S		S	S															G	G	G		B	T	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410						.	.	.	.	.	.	.	.	.	420	.	.	.	.						.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																														.	.	.	.	.															.	.	.	.	.
Query SS confidence																														.	.	.	.	.															.	.	.	.	.
Query Sequence		D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	.	.	.	.	.	F	G	F	E	K	I	V	V	K	L	S	T	R	P	.	.	.	.	.	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F
Query Conservation																														.	.	.	.	.															.	.	.	.	.
Alig confidence																														.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		D	A	H	I	I	V	P	G	G	R	V	I	D	V	V	Y	D	V	F	E	E	M	K	L	V	L	E	R	L	F	K	L	G	V	S	S	E	T	F	K	V	R	L	S	M	S	D	K	S	L	I	G	K	E	F	M	G	S	K	E	E	W	E	G	A	E	E	A	L	R	E	A	A	S	R	I	N	E	K	Y
Template Known Secondary structure									G	G	G																			T	S					S	T	T	T										G	G	G	B	T	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		453	.	.					.	.	.	.	460	.	.	.	.	.	.	.	.	.	470				.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure					.	.	.	.																.	.	.																										.
Query SS confidence					.	.	.	.																.	.	.																										.
Query Sequence		E	Y	Q	.	.	.	.	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	.	.	.	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S	A	.	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I
Query Conservation					.	.	.	.																.	.	.																										.
Alig confidence					.	.	.	.																.	.	.																										.
Template Conservation
Template Sequence		G	I	D	I	V	E	L	E	G	E	A	A	F	Y	G	P	K	L	D	F	I	M	M	V	E	E	S	G	V	S	K	E	W	Q	M	G	T	I	Q	F	D	F	N	L	P	R	R	F	R	L	Y	D	V	V	R	E	E	F	G	I	E	E	V	Y	I	I	H	R	A	L	L	G	S	I	E	R	F	L	G	V
Template Known Secondary structure									T	T		S	B	T	T	B											S	S	S														S	S					T	T												S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.							.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.		.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.		.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																												.																		.
Query SS confidence																									.	.	.	.	.	.																												.																		.
Query Sequence		L	T	E	E	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	.	.	.	.	.	.	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	.	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	.	Y	M	L	V	C
Query Conservation																									.	.	.	.	.	.																												.																		.
Alig confidence																									.	.	.	.	.	.																												.																		.
Template Conservation
Template Sequence		Y	L	E	H	R	R	G	R	M	P	F	T	L	A	P	I	Q	F	A	V	I	A	V	K	T	G	G	E	V	D	R	E	I	E	D	L	A	S	S	I	A	K	G	L	L	D	K	G	F	R	V	A	V	K	G	S	S	K	T	G	L	S	S	D	V	R	H	I	E	S	T	A	K	P	A	V	N	V	F	I
Template Known Secondary structure						T	T	T				G	G	G		S		S									S	S	T	T																		T	T										T	T	T											T	T			S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.					.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	.	.	.	.	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	S
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		G	A	K	E	V	R	E	K	V	L	D	V	R	V	F	D	L	E	S	M	K	R	R	R	L	A	I	A	Y	G	D	A	A	D	A	V	E	N	L	A	A	V	A	E
Template Known Secondary structure									T									T	T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.