Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 16 Aligned Residues 385 % Identity 20% Template c2pmfA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glycyl-trna synthetase; PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant Resolution 2.85 Å

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		255	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure								.	.	.	.	.	.																										.																																						.	.	.	.	.
Query SS confidence								.	.	.	.	.	.																										.																																						.	.	.	.	.
Query Sequence		H	M	Q	E	E	A	.	.	.	.	.	.	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	.	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	.	.	.	.	.
Query Conservation								.	.	.	.	.	.																										.																																						.	.	.	.	.
Alig confidence								.	.	.	.	.	.																										.																																						.	.	.	.	.
Template Conservation
Template Sequence		F	Y	D	Q	A	F	A	I	Y	G	G	V	S	G	L	Y	D	F	G	P	V	G	C	A	L	K	N	N	I	I	Q	T	W	R	Q	H	F	I	Q	E	E	Q	I	L	E	I	D	C	T	M	L	T	P	E	P	V	L	K	T	S	G	H	V	D	K	F	A	D	F	M	V	K	D	V	K	N	G	E	C	F
Template Known Secondary structure		S				T	T	G	G	G	T			T	T																							T					T								S									T	T		T	T	T	S								B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																																																																															323	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	D	H	L	L	K	A	H	L	Q	K	L	M	S	D	K	K	C	S	V	E	K	K	S	E	M	E	S	V	L	A	Q	L	D	N	Y	G	Q	Q	E	L	A	D	L	F	V	N	Y	N	V	K	S	P	I	T	G	N	D	L	S	P	P	V	S	F	N	L	M	F	K	T	F	I	G	P	G	G	N	M
Template Known Secondary structure																S		S	S	S													T	T	G	G	G													T	T				S	S	S				B									S						S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																											.																																																						.
Query SS confidence																											.																																																						.
Query Sequence		E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	.	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	.
Query Conservation																											.																																																						.
Alig confidence																											.																				.																																		.
Template Conservation																																															.
Template Sequence		P	G	Y	L	R	P	E	T	A	Q	G	I	F	L	N	F	K	R	L	L	E	F	N	Q	G	K	L	P	F	A	A	A	Q	I	G	N	S	F	R	N	E	I	S	P	R	.	S	G	L	I	R	V	R	E	F	T	M	A	E	I	E	H	F	V	D	P	S	E	K	D	H	P	K	F	Q	N	V	A	D	L
Template Known Secondary structure							S		S						T	T								T	T	T		S															S	S			.	S	T	T	S	S		S													T	T					T	T	G	G	G	T	T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
						404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.			.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																				.	.
Query SS confidence		.	.	.	.																																																				.	.
Query Sequence		.	.	.	.	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	.	.	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A
Query Conservation		.	.	.	.																																																				.	.
Alig confidence		.	.	.	.																																																				.	.
Template Conservation
Template Sequence		H	L	Y	L	Y	S	A	K	A	Q	V	S	G	Q	S	A	R	K	M	R	L	G	D	A	V	E	Q	G	V	I	N	N	T	V	L	G	Y	F	I	G	R	I	Y	L	Y	L	T	K	V	G	I	S	P	D	K	L	R	F	R	Q	H	M	E	N	A	C	D	C	W	D	A	E	S	K	T	S	Y	G	W	I
Template Known Secondary structure													T	T														T	T	S	S																				T			G	G	G																					T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		478	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.												.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure							.																																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	C	G	T	.	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	.	.	.	.	.	.	.	.	.	.	.	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M
Query Conservation							.																																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.
Template Sequence		E	I	V	G	C	A	D	R	S	C	Y	D	L	S	C	H	A	R	R	F	Q	K	T	L	Y	V	E	E	V	V	P	N	V	I	E	P	S	F	.	.	R	L	G	R	I	M	Y	T	V	F	E	H	T	F	H	V	R	E	G	D	E	Q	R	T	F	F	S	F	P	A	V	V	A	P	F	K	C	S	V	L
Template Known Secondary structure										S	S		S												T	T	T													.	.																		S	S	S	S									T	T	T	S	S		S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440			.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		546	.	.			.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.			.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure					.	.																																																										.	.
Query SS confidence					.	.																																																										.	.
Query Sequence		N	I	T	.	.	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	.	.	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V
Query Conservation					.	.																																																										.	.
Alig confidence					.	.																																																										.	.
Template Conservation
Template Sequence		P	L	S	Q	N	Q	E	F	M	P	F	V	K	E	L	S	E	A	L	T	R	H	G	V	S	H	K	V	D	D	S	S	G	S	I	G	R	R	Y	A	R	T	D	E	I	G	V	A	F	G	V	T	I	D	F	D	T	V	N	K	T	P	H	T	A	T	L	R	D	R	D	S	M	R	Q	I	R	A	E	I
Template Known Secondary structure			S	S			T	T	T														T	T										S												T	T														S	S	S								T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.		.	.	.	.	640	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	.	S	L	K	Q	L	E	E
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		S	E	L	P	S	I	V	Q	D	L	A	N	G	N	I	T	W	A	D	V	E	A
Template Known Secondary structure		T	T										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.