Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 5 Aligned Residues 385 % Identity 22% Template c2i4lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:proline-trna ligase; PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase Resolution 2.00 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		E	A	E	I	V	S	H	R	L	M	.	.	.	L	R	A	G	M	L	R	Q	E	A	A	G	I	Y	A	W	L	P	L	G	H	R	V	L	K	K	I	E	Q	I	V	R	E	E	Q	N	R	A	G	A	I	E	L	L	M	P	T	L	Q	L	A	D	L	W	R	E	S	G	R	Y	D	A	Y	G	P	E	M
Template Known Secondary structure		T			S							.	.	.			T	T							T	T																										T	T								S											T					S		T	T	S
Template Predicted Secondary structure												.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		318	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.
Predicted Secondary structure								.																																																																						.
Query SS confidence								.																																																																						.
Query Sequence		F	T	T	S	S	E	.	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	.	I	R	D
Query Conservation								.																																																																						.
Alig confidence								.																																																.																						.
Template Conservation																																																								.
Template Sequence		L	R	I	A	D	R	H	K	R	E	L	L	Y	G	P	T	N	E	E	M	I	T	E	I	F	R	A	Y	I	K	S	Y	K	S	L	P	L	N	L	Y	H	I	Q	W	K	F	R	D	E	Q	R	P	R	F	.	G	V	M	R	G	R	E	F	L	M	K	D	A	Y	S	F	D	V	D	E	A	G	A	R	K
Template Known Secondary structure							T	T								S																B	G	G	G		S														S	S		B	T	.	G	G	G	B		S												S	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		S	Y	N	K	M	F	V	A	Y	L	R	T	F	A	R	M	G	L	K	A	I	P	M	R	A	E	T	G	P	I	G	G	D	L	S	H	E	F	I	V	L	A	E	T	G	E	S	G	V	Y	I	D	R	D	V	L	N	L	P	V	P	D	E	N	V	D	Y	D	G	D	L	T	P	I	I	K	Q	W	T	S
Template Known Secondary structure																	T	T												T	T			S										T	T		S							G	G	G	G	G						T	T			T	T	S										T	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
																												475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation																																																																				.	.
Template Sequence		V	Y	A	A	T	E	D	V	H	E	P	A	R	Y	E	S	E	V	P	E	A	N	R	L	N	T	R	G	I	E	V	G	Q	I	F	Y	F	G	T	K	Y	S	D	S	M	K	A	N	V	T	G	P	D	G	T	D	A	P	I	H	G	G	S	Y	G	V	.	.	G	V	S	R	L	L	G	A	I	I	E	A
Template Known Secondary structure		S					T	T	T										S		G	G	G																	T						T	T						T	T	S													.	.
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330
		529	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.				.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure						.	.	.	.																.	.	.
Query SS confidence						.	.	.	.																.	.	.
Query Sequence		F	A	G	F	.	.	.	.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	.	.	.	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V
Query Conservation						.	.	.	.																.	.	.
Alig confidence						.	.	.	.																.	.	.
Template Conservation
Template Sequence		C	H	D	D	N	G	I	I	W	P	E	A	V	A	P	F	R	V	T	I	L	N	L	K	Q	G	D	A	A	T	D	A	A	C	D	Q	L	Y	R	E	L	S	A	K	G	V	D	V	L	Y	D	D	T	D	Q	R	A	G	A	K	F	A	T	A	D	L	I	G	I	P	W	Q	I	H	V	G	P	R	G	L
Template Known Secondary structure		S			T	T						T	T	T		S		S						T	T	T	T																		T	T								S	S														T		S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	G	K	V	E	L	K	R	R	S	D	G	A	R	E	N	L	A	L	A	D	V	V	A	R	L
Template Known Secondary structure			T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.