Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 31 Aligned Residues 293 % Identity 15% Template c2dq3A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 Resolution 3.00 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		A	G	A	Y	W	R	G	D	S	N	N	K	M	L	Q	R	I	Y	G	T	A	W	A	D	K	K	A	L	N	A	Y	L	Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	.	.	.	.	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L
Query Conservation																																																												.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	V	P	V	G	E	D	E	K	D	N	V	E	V	R	R	W	G	E	P	R	K	F	.	.	.	.	.	.	.	.	.	.	.	.	D	F	E	P	K	P	H	W	E	I	G	E	R	L	G	I	L	D	F	K	R	G	A	K	L	S	G	S	R	F	T	V	I	A	G	W	G	A	R	L	E	R	A	L
Template Known Secondary structure		T	T	S				S	S	G	G	G								S						.	.	.	.	.	.	.	.	.	.	.	.	S	S												T	T													S	S						T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.													.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		I	N	F	X	L	D	L	H	T	K	K	G	Y	K	E	I	C	P	P	H	L	V	K	P	E	I	L	I	G	T	G	Q	L	P	K	F	E	E	D	L	Y	K	C	E	.	.	R	D	N	L	Y	L	I	P	T	A	E	V	P	L	T	N	L	Y	R	E	E	I	L	K	E	E	N	L	P	I	Y	L	T	A
Template Known Secondary structure												T	T								S											S		T	T	T	T	G	G	G	S		B		T	.	.	T	T						S	S	T						G	G	G	T	T					T	T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		F	G	S	C	H	R	N	E	P	S	G	S	L	.	.	.	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W
Query Conservation															.	.	.
Alig confidence															.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	P	C	Y	R	R	E	A	G	A	Y	G	K	D	I	R	G	I	I	R	Q	H	Q	F	D	K	V	E	L	V	K	I	V	H	P	D	T	S	Y	D	E	L	E	K	L	V	K	D	A	E	E	V	L	Q	L	L	G	L	P	Y	R	V	V	E	L	C	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S			S	S	S		S	S	S	S	S		S													G	G	G																				T										T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	L	G	F	S	A	A	K	T	Y	D	I	E	V	W	F	P	S	Q	N	K	Y	R	E	I	S	S	C	S	N	C	E	D	F	Q	A	R	R	X	N	T	R	F	K	D	S	K	T	G	K	N	R	F	V	H	T	L	N	G	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T		S										G	G	G	T												T	T							T						T	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.						.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	.	F	P	T	W	L	A	P
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.
Template Conservation
Template Sequence		G	L	A	V	G	R	T	L	A	A	I	L	E	N	Y	Q	Q	E	D	G	S	V	V	V	P	E	V	L	R	D
Template Known Secondary structure																T	B		T	T	S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions