Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 26 Aligned Residues 386 % Identity 14% Template c2dq0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog Resolution 2.60 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	D	V	E	A	L	E	K	R	M	H	E	L	A	E	K	N	Y	D	V	I	K	K	K	V	S	W	H	E	A	R	E	T	F	A	N	R	G	E	S	Y	K	V	S	I	L	D	E	N	I	A	H	D	D	K	P	G	L	Y	F	H	E	E	Y	V	D	M	C	R	G	P	H	V	P	N	M	R	F	C
Query Conservation
Alig confidence																																								.	.														.	.	.	.	.	.
Template Conservation																																								.	.														.	.	.	.	.	.
Template Sequence		L	K	E	I	N	R	L	R	H	E	R	N	K	I	A	V	E	I	G	K	R	R	K	K	G	E	P	V	D	E	L	L	A	K	S	R	E	I	.	.	V	K	R	I	G	E	L	E	N	E	V	E	E	.	.	.	.	.	.	L	K	K	K	I	D	Y	Y	L	W	R	L	P	N	I	T	H	P	S	V	P
Template Known Secondary structure																								T	S				T											.	.														.	.	.	.	.	.										T	T	S						T	T	S
Template Predicted Secondary structure																																								.	.														.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		H	H	F	K	L	M	K	T	A	G	A	Y	W	R	G	D	S	N	N	K	M	L	Q	R	I	Y	G	T	A	W	A	D	K	K	A	L	N	A	Y	L	Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	.	.	.	.	P	G	M	V	F	W	H	N	D
Query Conservation																																																																					.	.	.	.
Alig confidence																				.	.	.	.																																														.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		V	G	K	D	E	N	D	N	V	P	I	R	F	W	G	K	A	R	.	.	.	.	V	W	K	G	H	L	E	R	F	L	E	Q	S	Q	G	K	M	E	Y	E	I	L	E	W	K	P	K	L	H	V	D	L	L	E	I	L	G	G	A	D	F	A	R	A	A	K	V	S	G	S	R	F	Y	Y	L	L	N	E
Template Known Secondary structure				S	S	G	G	G								S				.	.	.	.			G	G	G									T	T		S						S	S												T	T				S							T		T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		I	V	I	L	D	L	A	L	I	R	F	A	L	D	R	L	I	E	K	G	F	T	P	V	I	P	P	Y	M	V	R	R	F	V	E	E	G	S	T	S	F	E	D	F	E	D	V	I	Y	K	V	.	.	E	D	E	D	L	Y	L	I	P	T	A	E	H	P	L	A	G	M	H	A	N	E	I	L	D	G	K
Template Known Secondary structure																				T	T								S									T	T	S		T	T					T			B		.	.	T	T	S	S					S	S	T							T	T	T	T					T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	.	.	.	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K
Query Conservation																								.	.	.
Alig confidence																								.	.	.
Template Conservation
Template Sequence		D	L	P	L	L	Y	V	G	V	S	P	C	F	R	K	E	A	G	T	A	G	K	D	T	K	G	I	F	R	V	H	Q	F	H	K	V	E	Q	F	V	Y	S	R	P	E	E	S	W	E	W	H	E	K	I	I	R	N	A	E	E	L	F	Q	E	L	E	I	P	Y	R	V	V	N	I	C	T	G	D	L	G
Template Known Secondary structure		T		S														T	T		S	S		S			S	S	S	S		S													T	T	T																			T	T										G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure																																												.																	.	.
Query SS confidence																																												.																	.	.
Query Sequence		R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	.	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	.	.	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E
Query Conservation																																												.																	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																	.	.					.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		Y	V	A	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	D	I	E	A	W	M	P	G	Q	G	K	F	R	E	V	V	S	A	S	N	C	T	D	W	Q	.	A	R	R	L	N	I	R	F	R	D	R	T	D	E
Template Known Secondary structure		S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T												T	T	T	T	.					T					S	S	T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		350	.	.	.	.																																		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.						.	.	.	.	.	.	.	540			.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.									.	.
Query SS confidence																															.	.	.	.	.									.	.
Query Sequence		R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	.	F	P	T	W	L	A	P	V	.	.	Q	V	V	I	M	N	I
Query Conservation																															.	.	.	.	.									.	.
Alig confidence																															.	.	.	.	.									.	.
Template Conservation
Template Sequence		K	P	R	Y	V	H	T	L	N	S	T	A	I	A	T	S	R	A	I	V	A	I	L	E	N	H	Q	E	E	D	G	T	V	R	I	P	K	V	L	W	K	Y	T	G	F	K	E	I	V	P	V
Template Known Secondary structure																											S	B		T	T	S						G	G	G					S		S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.