Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8M3
Confidence100.00%DateThu Jan 5 11:08:11 GMT 2012
Rank27Aligned Residues367
% Identity17%Templatec1wu7A_
PDB info PDB header:ligaseChain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from2 thermoplasma acidophilum
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   254.....260.........270.........280.........290.........300.........310.........320... ......330..
Predicted Secondary structure 



























.




Query SS confidence 





































































.








Query Sequence  YHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSE. NREYCIKPM
Query Conservation 
      

    

 
  
   
    
      

 

 

 
    
   


       

     .     


 
Alig confidence 






.

















































.










.








Template Conservation         .
  
 

        
           
  

  
 
             .         
  
    



Template Sequence  LQIEKIR. GFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEE. LLQQTYSFVDKGGREVTLIPE
Template Known Secondary structure 





T.T




TT




STTTS
TT.GGGGS

TTS

S
Template Predicted Secondary structure 






.






















.











Template SS confidence 















































































   4.....10 .........20.........30.........40.........50.........60 .........70.........80.
 
   333......340.........350.........360.........370.........380.........390.........400.........410..
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFG
Query Conservation    
           


 

 
    
  

 
      

 
 


 
 
  

    
   
    
     
   

Alig confidence 











..























....




















..














Template Conservation   
    
     ..    

 
    
 


 
     ....
 


 
   
 
       
.. 
 
         
 
Template Sequence  ATPSTVRXVTSR. . KDLQRPLRWYSFPKVWRYEEPQAG. . . . RYREHYQFNADIFGSDSPEAD. . AEVIALASSILDRLG
Template Known Secondary structure  STT
..TT

SS





S
SS....

SS

S..TT
Template Predicted Secondary structure 
..













....






..

Template SS confidence 















































































   82.......90... ......100.........110....... ..120.........130........ .140.........150...
 
   413.. ....420.... .....430.........440.........450.........460..
Predicted Secondary structure 

.


.............................

















Query SS confidence 


.








. . . . . . . . . . . . . . . . . . . . . . . . . . . . .





































Query Sequence  FEK. IVVKLSTRP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . EKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFY
Query Conservation     .  
 

   .............................    
  
    

  
   
           
  


Alig confidence 


.








.............................





































Template Conservation          
                                                    
                  
Template Sequence  LQDIYEIRINSRKIXEEIIGGXTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSXIADLCSGTRGIDEXARITG
Template Known Secondary structure  TTTSTT
SS
TTTTS
TT

S
B
TT
Template Predicted Secondary structure 




























Template SS confidence 















































































   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   463.. ....470.........480.........490.........500.........510.........520.........530....
Predicted Secondary structure 


...























.....
Query SS confidence 


. . .




































































. . . . .
Query Sequence  GPK. . . IEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFP. . . . .
Query Conservation 


...

  
 
 


     




      
 
 
         
  
  
  

 

 
  
 
   
  
.....
Alig confidence 


...




























.





















.















.....
Template Conservation                         
  
        .

 
  

          
  
.



 

         


  
Template Sequence  KSSEEIARXAAVEDLLASYGVKNVRYDFSIVRGLS. YYTGIVFEAYDRSGQFRAILGG. GRYDNLASLXSGESVPAVGFG
Template Known Secondary structure 


TT




TT

TTTT.T
SSTTSS
S
SS.
TTS



Template Predicted Secondary structure 














.















.








Template SS confidence 















































































   234.....240.........250.........260........ .270.........280.........290 .........300.........310.
 
   535....540.........550.........560.........570.........580.........590........
Predicted Secondary structure  ................



















Query SS confidence  . . . . . . . . . . . . . . . .































































Query Sequence  . . . . . . . . . . . . . . . . TWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGD
Query Conservation  ................  


 

 



       
  
   

  

 
  
     
 



 
   


  



 
Alig confidence  ................































































Template Conservation       
                    
            
   
   

 
  
      
 
   
   


  
 

 
Template Sequence  XGDAVISLLLKRENVQIPREKKSVYICRVGKINSSIXNEYSRKLRERGXNVTVEIXERGLSAQLKYASAIGADFAVIFGE
Template Known Secondary structure  TT




SS
SS

TTT


S


TT
S
Template Predicted Secondary structure 




























Template SS confidence 















































































   312.......320.........330.........340.........350.........360.........370.........380.........390.
 
   599600.........610.........620.........630..
Predicted Secondary structure 






Query SS confidence 

































Query Sequence  KEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEI
Query Conservation   
     



      
  
 
 


  
    
Alig confidence 

































Template Conservation         
 

   
     
   

   
    
Template Sequence  RDLERGVVTIRNXYTGSQENVGLDSVVEHLISQA
Template Known Secondary structure  TTTTT

GGG

Template Predicted Secondary structure 








Template SS confidence 

































   392.......400.........410.........420.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions