Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 30 Aligned Residues 309 % Identity 20% Template c1wleB_ PDB info PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate Resolution 1.65 Å

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		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		H	V	P	N	M	R	F	C	H	H	F	K	L	M	K	T	A	G	A	Y	W	R	G	D	S	N	N	K	M	L	Q	R	I	Y	G	T	A	W	A	D	K	K	A	L	N	A	Y	L	Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	.	.	.	.	P
Query Conservation																																																																													.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	P	N	Q	.	.	.	.	.	.	.	.	.	.	T	H	P	D	V	P	V	G	D	E	S	Q	A	R	V	L	H	V	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	K	P	A	F	S	F	Q	P	R	G	H	L	E	I	A	E	K	L	D	I	I	R	Q	K	R	L	S	H	V	S	G	H
Template Known Secondary structure		T	S				.	.	.	.	.	.	.	.	.	.			T	T				S	S	G	G	G								S		.	.	.	.	.	.	.	.	.	.	.	.					S	S												T	T					T	T		T	T	T	T		T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.											.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.													.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.								.
Query SS confidence																																																									.								.
Query Sequence		G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	.	M	F	T	T	S	S	E	.	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q
Query Conservation																																																									.								.
Alig confidence																																																									.								.
Template Conservation
Template Sequence		R	S	Y	Y	L	R	G	A	G	A	L	L	Q	H	G	L	V	N	F	T	L	N	K	L	I	H	R	G	F	T	P	M	T	V	P	D	L	L	R	G	V	V	F	E	G	C	G	M	T	P	N	A	K	P	S	Q	I	Y	N	I	D	P	S	R	F	E	D	L	N	L	A	G	T	A	E	V	G	L	A	G
Template Known Secondary structure		T						T																				T	T								S											T			T	T	S	S	S		S	S		B			T	T	T	S	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																														.	.																								.	.
Query SS confidence																														.	.																								.	.
Query Sequence		I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	.	.	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	.	.	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K
Query Conservation																														.	.																								.	.
Alig confidence																														.	.																								.	.
Template Conservation
Template Sequence		Y	F	M	D	H	S	V	A	F	R	D	L	P	I	R	M	V	C	S	S	T	C	Y	R	A	E	T	D	T	G	K	E	P	W	G	L	Y	R	V	H	H	F	T	K	V	E	M	F	G	V	T	G	P	G	L	E	Q	S	S	E	L	L	E	E	F	L	S	L	Q	M	E	I	L	T	E	L	G	L	H	F
Template Known Secondary structure				T	T					G	G	G		S															S	S					S	S	S	T	T		S													S	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470				.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	.	.	.	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R
Query Conservation																																																									.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.																			.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		R	V	L	D	M	P	T	Q	E	L	G	L	P	A	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	D	I	E	A	W	M	P	G	R	G	R	F	G	E	V	T	S	A	S	N	C	T	D	F	Q	.	S	R	R
Template Known Secondary structure								G	G	G	S	T	T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T												T	T			.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.																																		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.						.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	Q
Query Conservation																																										.	.	.	.	.
Alig confidence																										.																.	.	.	.	.
Template Conservation																										.
Template Sequence		L	H	I	M	F	Q	T	E	A	G	E	L	Q	F	A	H	T	V	N	A	T	G	C	A	.	V	P	R	L	L	I	A	L	L	E	S	Y	Q	Q	K	D	G	S	V	L	V	P	P	A	L	Q	P	Y	L	G	T	D	R	I	T	T	P	T	H
Template Known Secondary structure			T						T	T																.													B		T	T	S						G	G	G					S	S	S						S	S
Template Predicted Secondary structure																										.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions