Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 1 Aligned Residues 641 % Identity 100% Template c1qf6A_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	I	T	L	P	D	G	S	Q	R	H	Y	D	H	A	V	S	P	M	D	V	A	L	D	I	G	P	G	L	A	K	A	C	I	A	G	R	V	N	G	E	L	V	D	A	C	D	L	I	E	N	D	A	Q	L	S	I	I	T	A	K	D	E	E	G	L	E	I	I	R	H	S	C	A	H	L	L	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	I	T	L	P	D	G	S	Q	R	H	Y	D	H	A	V	S	P	M	D	V	A	L	D	I	G	P	G	L	A	K	A	C	I	A	G	R	V	N	G	E	L	V	D	A	C	D	L	I	E	N	D	A	Q	L	S	I	I	T	A	K	D	E	E	G	L	E	I	I	R	H	S	C	A	H	L	L	G	H
Template Known Secondary structure							T	T	S						S	S		B																		S					T	T					T	T	S		B		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	K	Q	L	W	P	H	T	K	M	A	I	G	P	V	I	D	N	G	F	Y	Y	D	V	D	L	D	R	T	L	T	Q	E	D	V	E	A	L	E	K	R	M	H	E	L	A	E	K	N	Y	D	V	I	K	K	K	V	S	W	H	E	A	R	E	T	F	A	N	R	G	E	S	Y	K	V	S	I	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	K	Q	L	W	P	H	T	K	M	A	I	G	P	V	I	D	N	G	F	Y	Y	D	V	D	L	D	R	T	L	T	Q	E	D	V	E	A	L	E	K	R	M	H	E	L	A	E	K	N	Y	D	V	I	K	K	K	V	S	W	H	E	A	R	E	T	F	A	N	R	G	E	S	Y	K	V	S	I	L	D
Template Known Secondary structure								T	T										T	T									S	S																					T		B																			T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	I	A	H	D	D	K	P	G	L	Y	F	H	E	E	Y	V	D	M	C	R	G	P	H	V	P	N	M	R	F	C	H	H	F	K	L	M	K	T	A	G	A	Y	W	R	G	D	S	N	N	K	M	L	Q	R	I	Y	G	T	A	W	A	D	K	K	A	L	N	A	Y	L	Q	R	L	E	E	A	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	I	A	H	D	D	K	P	G	L	Y	F	H	E	E	Y	V	D	M	C	R	G	P	H	V	P	N	M	R	F	C	H	H	F	K	L	M	K	T	A	G	A	Y	W	R	G	D	S	N	N	K	M	L	Q	R	I	Y	G	T	A	W	A	D	K	K	A	L	N	A	Y	L	Q	R	L	E	E	A	A	K
Template Known Secondary structure				S		T	T									T	T						S	S				S	B	G	G	G			S											G	G	G		T	T	S												S	S																T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S
Template Known Secondary structure		T									T	T						T	T	S	T	T																										T	T								S				T							S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I
Template Known Secondary structure			T	T							S	S	S									T	T	S				G	G	G		S															G	G	G		B	T	T	T	B		S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G
Template Known Secondary structure									G	G	G	T													S	S			S																		T	T	T							T	T		S		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K
Template Known Secondary structure							S	S					T	T						T	T	S																												T	T				T	T	T		S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	S	L	K	Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	S	L	K	Q	L	E
Template Known Secondary structure				T	T	T									S	S												T	T		S							T	T	T	G	G	G								S	S	S																					T	T		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
		642
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		642