Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 12 Aligned Residues 359 % Identity 21% Template c1nj8C_ PDB info PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	.	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		S	D	I	L	E	K	A	E	I	Y	D	V	R	Y	P	I	K	G	C	G	V	Y	L	P	Y	G	F	K	I	R	R	Y	T	F	E	I	I	R	N	L	L	D	E	S	G	H	D	E	A	L	F	P	M	L	I	P	E	D	L	L	A	K	E	A	E	H	I	K	G	F	E	D	E	V	Y	W	V	T	H	G
Template Known Secondary structure								T	S	S		B			S	T	T	S	S			B																							T	T								S												S	S	S	G	G	G	G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		324						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.		.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.																																																										.					.
Query SS confidence			.	.	.	.	.																																																										.					.
Query Sequence		N	.	.	.	.	.	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	.	D	D	A	H	.	I	F	C	T	E	E	Q	I	R	D	E
Query Conservation			.	.	.	.	.																																																										.					.
Alig confidence			.	.	.	.	.																																														.												.					.
Template Conservation																																																					.
Template Sequence		G	K	T	Q	L	D	V	K	L	A	L	R	P	T	S	E	T	P	I	Y	Y	M	M	K	L	W	V	K	V	H	T	D	L	P	I	K	I	Y	Q	I	V	N	T	F	R	Y	E	T	K	H	T	.	R	P	L	I	R	L	R	E	I	M	T	F	K	E	A	H	T	A	H	S	T	K	E	E	A	E	N	Q
Template Known Secondary structure		S	S	S										S	S	S										T	T			B	T	T	S																	S			.	B	T	T	T	B		S	S		S										S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R
Query Conservation
Alig confidence																				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		V	K	E	A	I	S	I	Y	K	K	F	F	D	T	L	G	I	P	.	Y	L	I	S	K	R	P	E	W	D	K	F	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	Y	T	M	A	F	D	T	I	F	P	D	.	.	G	R
Template Known Secondary structure																	T			.								T	T	S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	T	.	.	S
Template Predicted Secondary structure																				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.																															.	200	.	.	.	.	.	.	.	.	.	210	.			.	.
		477	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure									.																																																		.	.	.	.																.	.	.	.
Query SS confidence									.																																																		.	.	.	.																.	.	.	.
Query Sequence		A	W	Q	C	G	T	V	.	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	.	.	.	.
Query Conservation									.																																																		.	.	.	.																.	.	.	.
Alig confidence									.																									.	.	.																							.	.	.	.																.	.	.	.
Template Conservation																																		.	.	.
Template Sequence		T	M	Q	I	A	T	V	H	N	L	G	Q	N	F	S	K	T	F	E	I	I	F	E	T	P	T	G	D	K	D	Y	A	.	.	.	Y	Q	T	C	Y	G	I	S	D	R	V	I	A	S	I	I	A	I	H	G	D	E	K	G	L	I	L	P	P	I	V	A	P	I	Q	V	V	I	V	P	L	I	F	K	G
Template Known Secondary structure													T						T	T						T	T	S	S					.	.	.									T												B	T	T	B					T	T	S		S	S	S									S	S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
			548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E
Query Conservation		.
Alig confidence		.																		.
Template Conservation																				.
Template Sequence		K	E	D	I	V	M	E	K	A	K	E	I	Y	E	K	L	K	G	.	K	F	R	V	H	I	D	D	R	D	I	R	P	G	R	K	F	N	D	W	E	I	K	G	V	P	L	R	I	E	V	G	P	K	D	I	E	N	K	K	I	T	L	F	R	R	D	T	M	E	K	F	Q	V	D	E	T	Q	L	M	E
Template Known Secondary structure																			T	.	T	S							S		S												T	T		S												T	T							T	T	T								T	T	S
Template Predicted Secondary structure																				.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Q	Q	E	I	R	S	R	S	L	K	Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	E	K	T	L	N	N	I	M	E	N	I	K	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions