Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 14 Aligned Residues 353 % Identity 22% Template c1nj2A_ PDB info PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus Resolution 3.11 Å

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		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	R
Query Conservation
Alig confidence																																										.																																	.	.	.	.	.
Template Conservation																																										.																																	.	.	.	.	.
Template Sequence		N	I	L	E	E	A	E	I	I	D	Q	R	Y	P	V	K	G	M	H	V	W	M	P	H	G	F	M	I	R	K	N	T	L	K	I	L	R	R	I	L	.	D	R	D	H	E	E	V	L	F	P	L	L	V	P	E	D	E	L	A	E	V	Y	W	V	T	H	G	G	L	S	K	L	.	.	.	.	.	Q	R
Template Known Secondary structure							T	T							S	S	T	T																								.	T	T	T								S																S	S	S	S			.	.	.	.	.
Template Predicted Secondary structure																																										.																																	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																																										.					.
Query SS confidence																																																										.					.
Query Sequence		E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	.	D	D	A	H	.	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L
Query Conservation																																																										.					.
Alig confidence																																														.												.					.
Template Conservation																																														.
Template Sequence		K	L	A	L	R	P	T	S	E	T	V	M	Y	P	M	F	A	L	W	V	R	S	H	T	D	L	P	M	R	F	Y	Q	V	V	N	T	F	R	Y	E	T	K	H	T	.	R	P	L	I	R	V	R	E	I	T	T	F	K	E	A	H	T	I	H	A	T	A	S	E	A	E	E	Q	V	E	R	A	V	E	I
Template Known Secondary structure							S		T														S	T	T	T																	S			.	B	T	T	T	B		S													S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V
Query Conservation
Alig confidence													.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation													.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		Y	K	E	F	F	N	S	L	G	I	P	.	Y	L	I	T	R	R	P	P	W	D	K	F	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	Y	T	V	A	F	D	T	L	M	P	D	.	.	G	K	T	L	Q	I	G	T	V
Template Known Secondary structure										T			.					B			T	T	T	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	T	.	.	S
Template Predicted Secondary structure													.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.																															.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.
			484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.
Predicted Secondary structure		.																																																		.	.	.	.																	.	.	.	.	.
Query SS confidence		.																																																		.	.	.	.																	.	.	.	.	.
Query Sequence		.	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	.	.	.	.	.	D	S	Q	S	E
Query Conservation		.																																																		.	.	.	.																	.	.	.	.	.
Alig confidence		.																							.	.	.																									.	.	.	.																	.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		H	N	L	G	Q	T	F	A	R	T	F	E	I	K	F	E	T	P	E	G	D	H	E	.	.	.	Y	V	H	Q	T	C	Y	G	L	S	D	R	V	I	A	S	V	I	A	I	H	G	D	E	S	G	L	C	L	P	P	D	V	A	A	H	Q	V	V	I	V	P	I	I	F	K	K	A	A	E	E	V	M	E
Template Known Secondary structure						S							T						T	T	S				.	.	.											T										T			S	S	S					T	T	T	S	S		S								S	S	S	S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	R	E	L	R	S	R	L	E	A	A	G	F	R	V	H	L	D	D	R	D	I	R	A	G	R	K	Y	Y	E	W	E	M	R	G	V	P	L	R	V	E	I	G	P	R	D	L	E	K	G	A	A	V	I	S	R	R	D	T	G	E	K	V	T	A	D	L	Q	G	I	E	E	T	L	R	E	L	M	K
Template Known Secondary structure												T	T	T										S													T		S													T							S	S	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		634	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	S	L	K	Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	L	E	N	L	R	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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